Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6B7
DateWed Jan 25 15:20:14 GMT 2012
Unique Job ID5eeb181953e3d061

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3lvmB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
Confidence and coverage
Confidence:100.0% Coverage: 96%
388 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD
Secondary structure 
SS confidence 
Disorder  ???????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFE
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMR
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNI
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........370.........380.........390.........400....
Sequence  TTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH
Secondary structure 
SS confidence 
Disorder 
?
?
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3lvm chain B

3D model

Region: 1 - 393
Aligned: 388
Modelled: 393
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs

Phyre2

PDB 1p3w chain A

3D model

Region: 2 - 392
Aligned: 385
Modelled: 391
Confidence: 100.0%
Identity: 100%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1jf9 chain A

3D model

Region: 5 - 380
Aligned: 361
Modelled: 365
Confidence: 100.0%
Identity: 26%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2hdy chain A

3D model

Region: 2 - 382
Aligned: 378
Modelled: 381
Confidence: 100.0%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase

Phyre2

PDB 1eg5 chain A

3D model

Region: 5 - 380
Aligned: 358
Modelled: 363
Confidence: 100.0%
Identity: 40%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3cai chain A

3D model

Region: 5 - 376
Aligned: 357
Modelled: 372
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein

Phyre2

PDB 1t3i chain A

3D model

Region: 5 - 380
Aligned: 361
Modelled: 364
Confidence: 100.0%
Identity: 27%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3e9k chain A

3D model

Region: 5 - 378
Aligned: 349
Modelled: 353
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex

Phyre2

PDB 2hzp chain A

3D model

Region: 5 - 378
Aligned: 349
Modelled: 353
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase

Phyre2

PDB 1qz9 chain A

3D model

Region: 5 - 380
Aligned: 348
Modelled: 355
Confidence: 100.0%
Identity: 21%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 2c0r chain A domain 1

3D model

Region: 5 - 379
Aligned: 342
Modelled: 351
Confidence: 100.0%
Identity: 14%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1w23 chain A

3D model

Region: 5 - 378
Aligned: 341
Modelled: 342
Confidence: 100.0%
Identity: 11%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1elu chain A

3D model

Region: 1 - 376
Aligned: 348
Modelled: 354
Confidence: 100.0%
Identity: 22%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1bjn chain A

3D model

Region: 5 - 379
Aligned: 344
Modelled: 354
Confidence: 100.0%
Identity: 12%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 3m5u chain A

3D model

Region: 5 - 379
Aligned: 341
Modelled: 355
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni

Phyre2

PDB 3e77 chain A

3D model

Region: 12 - 381
Aligned: 345
Modelled: 355
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: human phosphoserine aminotransferase in complex with plp

Phyre2

PDB 3ffr chain A

3D model

Region: 5 - 377
Aligned: 337
Modelled: 346
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution

Phyre2

PDB 3nnk chain C

3D model

Region: 6 - 392
Aligned: 351
Modelled: 368
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway

Phyre2

PDB 2ch1 chain A domain 1

3D model

Region: 1 - 380
Aligned: 344
Modelled: 361
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3qm2 chain A

3D model

Region: 5 - 379
Aligned: 321
Modelled: 327
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium

Phyre2
1
c3lvmB_
2
d1p3wa_
3
d1jf9a_
4
c2hdyA_
5
d1eg5a_
6
c3caiA_
7
d1t3ia_
8
c3e9kA_
9
c2hzpA_
10
d1qz9a_
11
d2c0ra1
12
d1w23a_
13
d1elua_
14
d1bjna_
15
c3m5uA_
16
c3e77A_
17
c3ffrA_
18
c3nnkC_
19
d2ch1a1
20
c3qm2A_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3lvmB_
100.0 100 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
2d1p3wa_
100.0 100 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
3d1jf9a_
100.0 26 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
4c2hdyA_
100.0 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
5d1eg5a_
100.0 40 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
6c3caiA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
7d1t3ia_
100.0 27 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
8c3e9kA_
100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
9c2hzpA_
100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
10d1qz9a_
100.0 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
11d2c0ra1
100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
12d1w23a_
100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
13d1elua_
100.0 22 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
14d1bjna_
100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
15c3m5uA_
100.0 13 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni
16c3e77A_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: human phosphoserine aminotransferase in complex with plp
17c3ffrA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
18c3nnkC_
100.0 18 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
19d2ch1a1
100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
20c3qm2A_
100.0 12 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
21c3f0hA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
22c3mafB_
not modelled 100.0 19 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
23c2huuA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
24c3islA_
not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
25d2bkwa1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
26d1vjoa_
not modelled 100.0 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
27d1kl1a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
28c2z9wA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
29d1h0ca_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
30c2ogeC_
not modelled 100.0 14 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
31c2dr1A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
32c2fyfB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
33c3f9tB_
not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
34d1js3a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
35c3frkB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
36c3kaxB_
not modelled 100.0 15 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
37c3uwcA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
38d1svva_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
39c2w8wA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
40d1c7na_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
41c2okkA_
not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:glutamate decarboxylase 2;
PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
42c2dkjB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
43d1cl1a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
44c3hbxB_
not modelled 100.0 19 PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
45d1dfoa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
46d1iuga_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
47d1m32a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
48c2jisA_
not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
49d1v72a1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
50c3ly1C_
not modelled 100.0 18 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
51c2yrrA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class v;
PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8
52c3cbfA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
53c3mc6C_
not modelled 100.0 15 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
54d1wyua1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
55c2po3B_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
56d1mdoa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
57c3ftbA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
58c3l8aB_
not modelled 100.0 15 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
59c2gqnB_
not modelled 100.0 14 PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
60c3dr4B_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
61c3getA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
62c3a2bA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
63c3bcxA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
64d2bwna1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
65c3hdoB_
not modelled 100.0 20 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
66d1bs0a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
67c3tqxA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
68d1b9ha_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
69c3eucB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
70d1qgna_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
71c3ju7B_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
72d1v2da_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
73c3ffhA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
74d1j32a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
75d1m6sa_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
76c3jtxB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
77c3k40B_
not modelled 100.0 15 PDB header:lyase
Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase;
PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase
78d1d2fa_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
79c2c7tA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
80c2cb1A_
not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
81c3nysA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
82d1o69a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
83c3dzzB_
not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
84c3p1tB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution
85d1fc4a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
86c1d2fB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
87d3bc8a1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
88c3op7A_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
89d1pmma_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
90c3hqtB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
91d1bw0a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
92d1y4ia1
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
93d1x0ma1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
94d1lc5a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
95c3h14A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
96c3g0tA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
97d1xi9a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
98d1vefa1
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
99c3pdxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminotransferase;
PDBTitle: crystal structural of mouse tyrosine aminotransferase
100c3hl2D_
not modelled 100.0 12 PDB header:transferase
Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase;
PDBTitle: the crystal structure of the human sepsecs-trnasec complex
101d2fnua1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
102c2qmaB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4-
PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus
103c3fkdC_
not modelled 100.0 16 PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
104d1wyub1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
105c2r0tA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
106c3a8uX_
not modelled 100.0 14 PDB header:transferase
Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase;
PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase
107c3h7fB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
108c3i4jC_
not modelled 100.0 18 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
109d1wsta1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
110d1o4sa_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
111d2r5ea1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
112c3dydB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:tyrosine aminotransferase;
PDBTitle: human tyrosine aminotransferase
113c3ke3A_
not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase;
PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
114d1b5pa_
not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
115c3b46B_
not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
116d1cs1a_
not modelled 99.9 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
117c2nmpC_
not modelled 99.9 20 PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
118c2o0rA_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
119c3eleB_
not modelled 99.9 17 PDB header:transferase
Chain: B: PDB Molecule:amino transferase;
PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution
120c3dodA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0