Job Description P39383 Confidence 99.24% Date Thu Jan 5 12:00:15 GMT 2012 Rank 57 Aligned Residues 219 % Identity 17% Template c3js6A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein Resolution 1.95 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	I	G	I	D	S	G	S	T	A	T	K	G	I	L	L	A	D	G	V	I	T	R	R	F	L	V	P	T	P	F	R	P	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	X	A	L	D	F	G	N	G	F	V	K	G	K	I	N	D	E	K	F	V	I	P	S	R	I	G	R	K	T	N	E	N	N	Q	L	K	G	F	V	D	N	K	L	D	V	S	E	F	I	I	N	G	N	N	D	E	V	L	L	F	G	N	D	L	D	K	T	T	N	T	G	K	D	T	A	S	T	N
Template Known Secondary structure										S	S							T	T							S							S	S			S	S	T	T	T	S					S							T	T		T	T						S	T	T						S								S	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
												39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70																													.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	I	T	E	A	W	E	T	L	R	E	G	L	E	T	T	P	F	L	.	.	T	L	T	G	Y	G	R	Q	L	V	D	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	Q	V	T	E	I	S
Query Conservation		.	.	.	.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	R	Y	D	I	K	S	F	K	D	L	V	E	C	S	I	G	L	L	A	R	E	V	P	E	E	V	V	N	V	V	I	A	T	G	X	P	S	N	E	I	G	T	D	K	Q	A	K	F	E	K	L	L	N	K	S	R	L	I	E	I	D	G	I	A	K	T	I	N	V	K	G	V	K	I	V	A	Q	P	X
Template Known Secondary structure		T	G	G	G	S																T	T	S		S	S												G	G	G	T	T	S											S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		79	80	.	.	.	.									.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure								.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.
Query Sequence		C	H	G	L	G	A	.	.	.	.	.	.	.	.	R	F	L	A	P	A	T	R	A	V	I	D	I	G	G	Q	D	S	K	V	I	Q	L	D	D	D	G	N	L	C	D	F	L	M	N	D	K	C	A	A	G	T	G	R	F	L	E	V	I	S	R	T	L	G	T	S	V	E	Q	L	D	S	I	T	E	N
Query Conservation								.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																																						.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		G	T	L	L	D	L	N	X	E	N	G	K	V	F	K	A	F	T	E	G	K	Y	S	V	L	D	F	G	S	G	T	T	I	I	D	T	Y	Q	N	X	K	R	V	E	E	E	S	F	V	I	N	.	.	K	G	T	I	D	F	Y	K	R	I	A	S	H	V	S	T	P	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T			T	T								T										S	S									T	T				G	G	G					S	.	.														T					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		V	T	P	H	A	I	T	S	M	C	T	V	F	A	E	S	E	A	I	S	L	R	S	A	G	V	A	P	E	A	I	L	A	G	V	I	N	A	M	A	R	R	S	A	N	F	I	A	R	.	.	.	.	L	S	C	E	A	P	I	L	F	T	G	G	V	S	H	C	Q	K	F	A	R	M	L	E	S	H	L
Query Conservation																																																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	E	K	G	L	E	F	K	D	E	F	Y	K	E	Q	D	S	L	I	E	E	V	X	S	N	F	E	I	T	V	G	N	I	N	S	I	D	R	I	I	V	T	G	G	G	A	N	I	.	.	H	F	D	S	L	S	H	Y	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S																											T			T	T	S		S						S	T	T				.	.									S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template SS confidence
																						242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	P	V	N	T	H	P	D	A	Q	F	A	G	A	I	G	A	A	V	I	G	Q	R	V	R	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	V	F	E	K	A	D	D	S	Q	F	S	N	V	R	G	Y	E	K	L	G	E	L	L	K	N	K
Template Known Secondary structure		S	S						S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions