Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

K

I

K

S

I

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K

A

V

L

L

L

A

L

L

T

S

T

S

F

A

A

G

K

N

V

N

V

E

F

R

K

G

H

S

S

A

Q

Y

S

G

E

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K

G

Y

D

Y

D

T

Y

T

F

Y

A

K

K

G

Q

Secondary structure

SS confidence

Disorder

?

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?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

K

V

H

V

S

I

S

N

E

G

A

D

T

Y

L

F

G

P

G

I

D

D

S

V

D

L

S

R

Y

S

P

E

L

D

S

H

G

Q

Y

S

L

P

A

S

G

K

Y

E

L

R

V

L

Q

T

R

N

D

A

R

K

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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130

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Sequence

N

K

T

K

K

Y

N

V

D

I

Q

I

K

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nqj chain B Region: 34 - 131 Aligned: 92 Modelled: 98 Confidence: 98.3% Identity: 16% Fold: CUB-like Superfamily: Collagen-binding domain Family: Collagen-binding domain Phyre2 PDB 3jqx chain A Region: 35 - 131 Aligned: 92 Modelled: 97 Confidence: 98.2% Identity: 14% PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cadmium Phyre2 PDB 1nqj chain A Region: 34 - 131 Aligned: 90 Modelled: 98 Confidence: 97.9% Identity: 17% Fold: CUB-like Superfamily: Collagen-binding domain Family: Collagen-binding domain Phyre2 PDB 2c34 chain A domain 1 Region: 53 - 133 Aligned: 81 Modelled: 81 Confidence: 95.3% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: ICP-like Family: ICP-like Phyre2 PDB 1wmd chain A domain 1 Region: 41 - 130 Aligned: 87 Modelled: 90 Confidence: 94.8% Identity: 20% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: Proprotein convertase P-domain Phyre2 PDB 2wgn chain B Region: 53 - 133 Aligned: 81 Modelled: 81 Confidence: 93.3% Identity: 14% PDB header:hydrolase inhibitor Chain: B: PDB Molecule:inhibitor of cysteine peptidase compnd 3; PDBTitle: pseudomonas aeruginosa icp Phyre2 PDB 3m86 chain B Region: 53 - 133 Aligned: 81 Modelled: 81 Confidence: 92.6% Identity: 7% PDB header:protein binding Chain: B: PDB Molecule:amoebiasin-2; PDBTitle: crystal structure of the cysteine protease inhibitor, ehicp2, from2 entamoeba histolytica Phyre2 PDB 2nqd chain A domain 1 Region: 53 - 132 Aligned: 80 Modelled: 80 Confidence: 89.9% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: ICP-like Family: ICP-like Phyre2 PDB 2p9r chain A Region: 57 - 131 Aligned: 70 Modelled: 75 Confidence: 89.5% Identity: 16% PDB header:signaling protein Chain: A: PDB Molecule:alpha-2-macroglobulin; PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3 Phyre2 PDB 2ds4 chain A Region: 55 - 131 Aligned: 74 Modelled: 77 Confidence: 86.2% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 Phyre2 PDB 2ov0 chain A domain 1 Region: 32 - 110 Aligned: 79 Modelled: 79 Confidence: 86.2% Identity: 14% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1id2 chain A Region: 35 - 110 Aligned: 76 Modelled: 76 Confidence: 85.6% Identity: 16% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 3c75 chain B Region: 35 - 110 Aligned: 76 Modelled: 76 Confidence: 85.6% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:amicyanin; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin Phyre2 PDB 3afg chain A Region: 35 - 131 Aligned: 90 Modelled: 97 Confidence: 81.8% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:subtilisin-like serine protease; PDBTitle: crystal structure of pron-tk-sp from thermococcus kodakaraensis Phyre2 PDB 2dia chain A domain 1 Region: 55 - 131 Aligned: 74 Modelled: 77 Confidence: 79.9% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Filamin repeat (rod domain) Phyre2 PDB 1bxu chain A Region: 46 - 110 Aligned: 63 Modelled: 65 Confidence: 74.7% Identity: 13% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 2plt chain A Region: 45 - 110 Aligned: 66 Modelled: 66 Confidence: 72.8% Identity: 17% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 2o14 chain A domain 1 Region: 81 - 131 Aligned: 43 Modelled: 51 Confidence: 71.3% Identity: 26% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: YxiM N-terminal domain-like Phyre2 PDB 1qni chain A domain 1 Region: 35 - 110 Aligned: 76 Modelled: 76 Confidence: 71.2% Identity: 17% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Nitrosocyanin Phyre2 PDB 2cua chain B Region: 54 - 110 Aligned: 54 Modelled: 57 Confidence: 69.0% Identity: 15% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 2cua chain A Region: 17 - 110 Aligned: 89 Modelled: 89 Confidence: 67.9% Identity: 12% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 1 d1nqjb_ 2 c3jqxA_ 3 d1nqja_ 4 d2c34a1 5 d1wmda1 6 c2wgnB_ 7 c3m86B_ 8 d2nqda1 9 c2p9rA_ 10 c2ds4A_ 11 d2ov0a1 12 d1id2a_ 13 c3c75B_ 14 c3afgA_ 15 d2diaa1 16 d1bxua_ 17 d2plta_ 18 d2o14a1 19 d1qnia1 20 d2cuab_ 21 d2cuaa_ 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nqjb_ 98.3 16 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 2 c3jqxA_ 98.2 14 PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cadmium 3 d1nqja_ 97.9 17 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 4 d2c34a1 95.3 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like 5 d1wmda1 94.8 20 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Proprotein convertase P-domain 6 c2wgnB_ 93.3 14 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:inhibitor of cysteine peptidase compnd 3; PDBTitle: pseudomonas aeruginosa icp 7 c3m86B_ 92.6 7 PDB header:protein binding Chain: B: PDB Molecule:amoebiasin-2; PDBTitle: crystal structure of the cysteine protease inhibitor, ehicp2, from2 entamoeba histolytica 8 d2nqda1 89.9 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like 9 c2p9rA_ 89.5 16 PDB header:signaling protein Chain: A: PDB Molecule:alpha-2-macroglobulin; PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3 10 c2ds4A_ 86.2 14 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 11 d2ov0a1 86.2 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 12 d1id2a_ 85.6 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 13 c3c75B_ 85.6 16 PDB header:oxidoreductase Chain: B: PDB Molecule:amicyanin; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 14 c3afgA_ 81.8 21 PDB header:hydrolase Chain: A: PDB Molecule:subtilisin-like serine protease; PDBTitle: crystal structure of pron-tk-sp from thermococcus kodakaraensis 15 d2diaa1 79.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 16 d1bxua_ 74.7 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 17 d2plta_ 72.8 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 18 d2o14a1 71.3 26 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:YxiM N-terminal domain-like 19 d1qnia1 71.2 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 20 d2cuab_ 69.0 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 21 d2cuaa_ 67.9 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 22 d1plaa_ not modelled 62.6 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 23 d2q0zx2 not modelled 61.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Sec63 C-terminal domain-like 24 d1wlha1 not modelled 60.6 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 25 d1v05a_ not modelled 57.3 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 26 c2vzqA_ not modelled 53.7 16 PDB header:hydrolase Chain: A: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: c-terminal cbm35 from amycolatopsis orientalis exo-2 chitosanase csxa in complex with digalacturonic acid 27 d7pcya_ not modelled 53.5 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 28 d1paza_ not modelled 53.2 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 29 d2jxma1 not modelled 50.9 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 30 c3eo6B_ not modelled 50.4 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 31 c1ksrA_ not modelled 49.2 10 PDB header:actin binding protein Chain: A: PDB Molecule:gelation factor; PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures 32 d1iuza_ not modelled 48.4 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 33 c1xmeB_ not modelled 47.7 14 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus 34 d1g0da1 not modelled 47.3 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 35 d2e9ia1 not modelled 46.7 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 36 c2yetB_ not modelled 45.8 26 PDB header:hydrolase Chain: B: PDB Molecule:gh61 isozyme a; PDBTitle: thermoascus gh61 isozyme a 37 d2d7ma1 not modelled 45.5 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 38 c3hrzA_ not modelled 45.3 15 PDB header:immune system Chain: A: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b 39 c3ef4A_ not modelled 44.3 11 PDB header:electron transport Chain: A: PDB Molecule:blue copper protein; PDBTitle: crystal structure of native pseudoazurin from2 hyphomicrobium denitrificans 40 c1kbwA_ not modelled 44.3 20 PDB header:oxidoreductase Chain: A: PDB Molecule:major outer membrane protein pan 1; PDBTitle: crystal structure of the soluble domain of ania from2 neisseria gonorrhoeae 41 d1kful2 not modelled 44.0 25 Fold:Calpain large subunit, middle domain (domain III) Superfamily:Calpain large subunit, middle domain (domain III) Family:Calpain large subunit, middle domain (domain III) 42 c2e9jA_ not modelled 43.6 11 PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b 43 d1bqka_ not modelled 43.5 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 44 d1bypa_ not modelled 43.5 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 45 c3hqxA_ not modelled 42.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 46 d1qfha1 not modelled 41.5 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 47 c2ee6A_ not modelled 40.7 17 PDB header:structural protein Chain: A: PDB Molecule:filamin-b; PDBTitle: solution structure of the 21th filamin domain from human2 filamin-b 48 c3cu7A_ not modelled 40.6 10 PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 49 d2bw4a1 not modelled 39.3 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 50 d1ibya_ not modelled 39.2 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 51 d2dj4a1 not modelled 38.1 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 52 c2w1wB_ not modelled 38.0 15 PDB header:hydrolase Chain: B: PDB Molecule:lipolytic enzyme, g-d-s-l; PDBTitle: native structure of a family 35 carbohydrate binding module2 from clostridium thermocellum 53 d1pcsa_ not modelled 37.0 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 54 d1kbva1 not modelled 36.1 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 55 c2h47C_ not modelled 35.8 14 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 56 d2d7oa1 not modelled 33.5 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 57 d1kv7a1 not modelled 33.2 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 58 d1fftb1 not modelled 32.2 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 59 c3nrqB_ not modelled 31.3 19 PDB header:transport protein Chain: B: PDB Molecule:periplasmic protein-probably involved in high-affinity fe2+ PDBTitle: crystal structure of copper-reconstituted fetp from uropathogenic2 escherichia coli strain f11 60 c3rghA_ not modelled 31.3 9 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens 61 d1qxpa3 not modelled 30.8 13 Fold:Calpain large subunit, middle domain (domain III) Superfamily:Calpain large subunit, middle domain (domain III) Family:Calpain large subunit, middle domain (domain III) 62 d1cyxa_ not modelled 30.8 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 63 c1cyxA_ not modelled 30.8 9 PDB header:electron transport Chain: A: PDB Molecule:cyoa; PDBTitle: quinol oxidase (periplasmic fragment of subunit ii with2 engineered cu-a binding site)(cyoa) 64 d2dmca1 not modelled 30.7 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 65 c2b39B_ not modelled 30.3 13 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 66 d2jnaa1 not modelled 30.0 33 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 67 d2diba1 not modelled 29.9 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 68 d1kdja_ not modelled 28.5 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 69 d2dmba1 not modelled 28.4 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 70 d1ndsa1 not modelled 28.2 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 71 d1ag6a_ not modelled 28.1 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 72 d1adwa_ not modelled 27.6 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 73 d1fwxa1 not modelled 27.6 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 74 c1wmeA_ not modelled 27.5 23 PDB header:hydrolase Chain: A: PDB Molecule:protease; PDBTitle: crystal structure of alkaline serine protease kp-43 from bacillus sp.2 ksm-kp43 (1.50 angstrom, 293 k) 75 d2di9a1 not modelled 26.5 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 76 d1df0a2 not modelled 26.1 13 Fold:Calpain large subunit, middle domain (domain III) Superfamily:Calpain large subunit, middle domain (domain III) Family:Calpain large subunit, middle domain (domain III) 77 d1snra1 not modelled 25.6 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 78 d1oe1a1 not modelled 24.8 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 79 d2di8a1 not modelled 24.7 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 80 c3zx1A_ not modelled 24.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, putative; PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase 81 d1plca_ not modelled 24.5 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 82 d2gtlo1 not modelled 24.1 20 Fold:Streptavidin-like Superfamily:Extracellular hemoglobin linker subunit, receptor domain Family:Extracellular hemoglobin linker subunit, receptor domain 83 c1mzzC_ not modelled 24.0 15 PDB header:oxidoreductase Chain: C: PDB Molecule:copper-containing nitrite reductase; PDBTitle: crystal structure of mutant (m182t)of nitrite reductase 84 d2ccwa1 not modelled 23.6 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 85 c3im2A_ not modelled 23.2 24 PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2; PDBTitle: structure of the c-terminal sec63 unit of yeast brr2, p41212 form 86 c1wa1X_ not modelled 23.1 19 PDB header:reductase Chain: X: PDB Molecule:dissimilatory copper-containing nitrite PDBTitle: crystal structure of h313q mutant of alcaligenes2 xylosoxidans nitrite reductase 87 c2yrlA_ not modelled 22.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1837 protein; PDBTitle: solution structure of the pkd domain from kiaa 1837 protein 88 d1pmya_ not modelled 22.6 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 89 c2w3jA_ not modelled 22.6 13 PDB header:sugar-binding protein Chain: A: PDB Molecule:carbohydrate binding module; PDBTitle: structure of a family 35 carbohydrate binding module from2 an environmental isolate 90 d1jmxa5 not modelled 22.5 15 Fold:Streptavidin-like Superfamily:Quinohemoprotein amine dehydrogenase A chain, domain 3 Family:Quinohemoprotein amine dehydrogenase A chain, domain 3 91 d1h8la1 not modelled 22.5 20 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 92 d1vpsa_ not modelled 21.5 18 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group I dsDNA viruses Family:Papovaviridae-like VP 93 d1nnxa_ not modelled 21.3 20 Fold:OB-fold Superfamily:Hypothetical protein YgiW Family:Hypothetical protein YgiW 94 c2fqeA_ not modelled 21.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:blue copper oxidase cueo; PDBTitle: crystal structures of e. coli laccase cueo under different2 copper binding situations 95 d2oyza1 not modelled 20.8 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 96 d2qi2a1 not modelled 20.2 14 Fold:Sm-like fold Superfamily:Dom34/Pelota N-terminal domain-like Family:Dom34/Pelota N-terminal domain-like 97 c3cnkB_ not modelled 19.0 22 PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the dimerization domain of human2 filamin a 98 d1mzya1 not modelled 18.9 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 99 c2w87B_ not modelled 18.5 16 PDB header:hydrolase Chain: B: PDB Molecule:esterase d; PDBTitle: xyl-cbm35 in complex with glucuronic acid containing2 disaccharide.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0