Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	V	P	V	Q	H	P	M	Y	I	D	G	Q	F	V	T	W	R	G	D	A	W	I	D	V	V	N	P	A	T	E	A	V	I	S	R	I	P	D	G	Q	A	E	D	A	R	K	A	I	D	A	A	E	R	A	Q	P	E	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	A	L	P	A	I	E	R	A	S	W	L	R	K	I	S	A	G	I	R	E	R	A	S	E	I	S	A	L	I	V	E	E	G	G	K	I	Q	Q	L	A	E	V	E	V	A	F	T	A	D	Y	I	D	Y	M	A	E	W	A	R
Secondary structure
SS confidence
Disorder			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	Y	E	G	E	I	I	Q	S	D	R	P	G	E	N	I	L	L	F	K	R	A	L	G	V	T	T	G	I	L	P	W	N	F	P	F	F	L	I	A	R	K	M	A	P	A	L	L	T	G	N	T	I	V	I	K	P	S	E	F
Secondary structure
SS confidence
Disorder										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	P	N	N	A	I	A	F	A	K	I	V	D	E	I	G	L	P	R	G	V	F	N	L	V	L	G	R	G	E	T	V	G	Q	E	L	A	G	N	P	K	V	A	M	V	S	M	T	G	S	V	S	A	G	E	K	I	M	A	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	A	K	N	I	T	K	V	C	L	E	L	G	G	K	A	P	A	I	V	M	D	D	A	D	L	E	L	A	V	K	A	I	V	D	S	R	V	I	N	S	G	Q	V	C	N	C	A	E	R	V	Y	V	Q	K	G	I	Y	D	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	V	N	R	L	G	E	A	M	Q	A	V	Q	F	G	N	P	A	E	R	N	D	I	A	M	G	P	L	I	N	A	A	A	L	E	R	V	E	Q	K	V	A	R	A	V	E	E	G	A	R	V	A	F	G	G	K	A	V	E	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		K	G	Y	Y	Y	P	P	T	L	L	L	D	V	R	Q	E	M	S	I	M	H	E	E	T	F	G	P	V	L	P	V	V	A	F	D	T	L	E	D	A	I	S	M	A	N	D	S	D	Y	G	L	T	S	S	I	Y	T	Q	N	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Sequence		N	V	A	M	K	A	I	K	G	L	K	F	G	E	T	Y	I	N	R	E	N	F	E	A	M	Q	G	F	H	A	G	W	R	K	S	G	I	G	G	A	D	G	K	H	G	L	H	E	Y	L	Q	T	Q	V	V	Y	L	Q	S
Secondary structure
SS confidence
Disorder																																																												?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2hg2 chain A Region: 3 - 479 Aligned: 477 Modelled: 477 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase Phyre2 PDB 3ed6 chain B Region: 4 - 478 Aligned: 474 Modelled: 475 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Phyre2 PDB 2o2q chain A Region: 1 - 478 Aligned: 477 Modelled: 478 Confidence: 100.0% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp Phyre2 PDB 1a4s chain A Region: 3 - 478 Aligned: 473 Modelled: 476 Confidence: 100.0% Identity: 35% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3ifg chain H Region: 1 - 478 Aligned: 477 Modelled: 478 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 Phyre2 PDB 1bxs chain A Region: 6 - 478 Aligned: 471 Modelled: 473 Confidence: 100.0% Identity: 33% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1o9j chain A Region: 1 - 478 Aligned: 476 Modelled: 478 Confidence: 100.0% Identity: 33% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3rh9 chain A Region: 6 - 476 Aligned: 470 Modelled: 464 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei Phyre2 PDB 2d4e chain B Region: 6 - 478 Aligned: 471 Modelled: 473 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 Phyre2 PDB 2jg7 chain G Region: 2 - 478 Aligned: 473 Modelled: 477 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity Phyre2 PDB 3jz4 chain C Region: 2 - 478 Aligned: 476 Modelled: 477 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme Phyre2 PDB 3ek1 chain C Region: 1 - 479 Aligned: 476 Modelled: 477 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 Phyre2 PDB 3k2w chain D Region: 1 - 478 Aligned: 476 Modelled: 478 Confidence: 100.0% Identity: 43% PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c Phyre2 PDB 2w8q chain A Region: 1 - 478 Aligned: 475 Modelled: 478 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. Phyre2 PDB 3iwk chain B Region: 8 - 479 Aligned: 471 Modelled: 472 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) Phyre2 PDB 1wnd chain A Region: 5 - 478 Aligned: 471 Modelled: 474 Confidence: 100.0% Identity: 38% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2ve5 chain H Region: 6 - 478 Aligned: 471 Modelled: 473 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa Phyre2 PDB 3qan chain B Region: 2 - 478 Aligned: 473 Modelled: 477 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans Phyre2 PDB 1o04 chain A Region: 2 - 479 Aligned: 476 Modelled: 478 Confidence: 100.0% Identity: 32% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3r31 chain A Region: 1 - 479 Aligned: 476 Modelled: 479 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens Phyre2 1 c2hg2A_ 2 c3ed6B_ 3 c2o2qA_ 4 d1a4sa_ 5 c3ifgH_ 6 d1bxsa_ 7 d1o9ja_ 8 c3rh9A_ 9 c2d4eB_ 10 c2jg7G_ 11 c3jz4C_ 12 c3ek1C_ 13 c3k2wD_ 14 c2w8qA_ 15 c3iwkB_ 16 d1wnda_ 17 c2ve5H_ 18 c3qanB_ 19 d1o04a_ 20 c3r31A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2hg2A_ 100.0 100 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase 2 c3ed6B_ 100.0 36 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 3 c2o2qA_ 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp 4 d1a4sa_ 100.0 35 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 5 c3ifgH_ 100.0 34 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 6 d1bxsa_ 100.0 33 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 7 d1o9ja_ 100.0 33 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 8 c3rh9A_ 100.0 35 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei 9 c2d4eB_ 100.0 32 PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 10 c2jg7G_ 100.0 28 PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity 11 c3jz4C_ 100.0 39 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 12 c3ek1C_ 100.0 36 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 13 c3k2wD_ 100.0 43 PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c 14 c2w8qA_ 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. 15 c3iwkB_ 100.0 35 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 16 d1wnda_ 100.0 38 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 17 c2ve5H_ 100.0 35 PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa 18 c3qanB_ 100.0 32 PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans 19 d1o04a_ 100.0 32 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 20 c3r31A_ 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 21 d1ag8a_ not modelled 100.0 32 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 22 d1uzba_ not modelled 100.0 31 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 23 c1t90B_ not modelled 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 24 c3i44A_ not modelled 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution 25 c3b4wA_ not modelled 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 26 d1euha_ not modelled 100.0 33 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 27 c3prlD_ not modelled 100.0 35 PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 28 d1ky8a_ not modelled 100.0 27 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 29 c3ju8B_ not modelled 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 30 d1bi9a_ not modelled 100.0 32 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 31 c3rosA_ not modelled 100.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus 32 c3hazA_ not modelled 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein 33 c3efvC_ not modelled 100.0 34 PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad 34 c3r64A_ not modelled 100.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum 35 c2vroB_ not modelled 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 36 c3pqaA_ not modelled 100.0 35 PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 37 d1ad3a_ not modelled 100.0 26 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 38 c3v4cB_ not modelled 100.0 23 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 39 d1ez0a_ not modelled 100.0 22 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 40 c3lnsD_ not modelled 100.0 25 PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct 41 c3k9dD_ not modelled 100.0 18 PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e 42 d1o20a_ not modelled 100.0 19 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 43 c3my7A_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a 44 c2h5gA_ not modelled 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 45 d1vlua_ not modelled 100.0 22 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 46 c1vluB_ not modelled 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution 47 d1k75a_ not modelled 98.5 17 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 48 c3fa4D_ not modelled 62.5 16 PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form 49 c2yvqA_ not modelled 54.1 12 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 50 c3e5bB_ not modelled 50.9 14 PDB header:lyase Chain: B: PDB Molecule:isocitrate lyase; PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis 51 d1a9xa2 not modelled 47.6 17 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 52 d1y5ea1 not modelled 46.6 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 53 d1s7ia_ not modelled 42.6 17 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 54 d1wo8a1 not modelled 42.3 13 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 55 c2yvkA_ not modelled 42.2 19 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 56 d2bona1 not modelled 41.3 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 57 d2ftsa3 not modelled 38.4 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 58 d1uz5a3 not modelled 36.9 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 59 c1uz5A_ not modelled 34.6 16 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 60 c2ixaA_ not modelled 33.3 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 61 c2l69A_ not modelled 28.6 21 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 62 d2g2ca1 not modelled 26.8 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 63 d1k99a_ not modelled 23.5 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 64 c2ec4A_ not modelled 23.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the uas domain from human fas-2 associated factor 1 65 d1xxaa_ not modelled 22.7 21 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 66 c3fghA_ not modelled 22.7 11 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 67 c2crjA_ not modelled 21.8 18 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 68 c2is8A_ not modelled 21.3 10 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 69 d1u0ta_ not modelled 21.3 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 70 c3jtpB_ not modelled 19.6 27 PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca 71 d1wu2a3 not modelled 19.5 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 72 c2eqzA_ not modelled 19.3 11 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 73 d1j3xa_ not modelled 18.8 11 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 74 c1j3xA_ not modelled 18.8 11 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 75 c3b8iF_ not modelled 17.3 18 PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+. 76 c3v4gA_ not modelled 17.2 21 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 77 c3rfuC_ not modelled 16.9 12 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 78 c2nqqA_ not modelled 16.1 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 79 d2ioja1 not modelled 16.1 17 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 80 c3f4lF_ not modelled 16.1 16 PDB header:oxidoreductase Chain: F: PDB Molecule:putative oxidoreductase yhhx; PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647 81 c2pjkA_ not modelled 15.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 82 d1mkza_ not modelled 15.7 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 83 d2lefa_ not modelled 15.3 14 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 84 d1hsma_ not modelled 14.8 18 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 85 c2cs1A_ not modelled 14.7 18 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 86 c2co9A_ not modelled 14.6 15 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 87 c3dtyA_ not modelled 14.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae 88 d1j46a_ not modelled 14.2 8 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 89 c2bonB_ not modelled 13.9 9 PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) 90 c3ereD_ not modelled 13.6 19 PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator 91 c2qiwA_ not modelled 13.6 15 PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution 92 d1lwma_ not modelled 13.0 21 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 93 d1v64a_ not modelled 12.8 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 94 c1jr2A_ not modelled 12.2 13 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 95 d1jr2a_ not modelled 12.2 13 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 96 c3peiA_ not modelled 12.0 14 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis 97 d1v63a_ not modelled 11.9 5 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 98 c3gfgB_ not modelled 11.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa; PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form 99 c1h6dL_ not modelled 11.8 18 PDB header:protein translocation Chain: L: PDB Molecule:precursor form of glucose-fructose PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0