Email l.a.kelley@imperial.ac.uk Description P64581 Date Thu Jan 5 12:09:38 GMT 2012 Unique Job ID 4f469329aba5c50a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1nfoA_ 91.4 15 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) 2 d1gs9a_ 88.3 16 Fold:Four-helical up-and-down bundle Superfamily:Apolipoprotein Family:Apolipoprotein 3 c2x43S_ 80.0 8 PDB header:membrane protein Chain: S: PDB Molecule:sherp; PDBTitle: structural basis of molecular recognition by sherp at membrane2 surfaces 4 c3kdpG_ 72.3 31 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 5 c3kdpH_ 72.3 31 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 6 c3r2pA_ 60.9 13 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: 2.2 angstrom crystal structure of c terminal truncated human2 apolipoprotein a-i reveals the assembly of hdl by dimerization. 7 c1av1B_ 58.8 12 PDB header:lipid transport Chain: B: PDB Molecule:apolipoprotein a-i; PDBTitle: crystal structure of human apolipoprotein a-i 8 d1eq1a_ 41.8 19 Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III 9 c2a01B_ 39.4 21 PDB header:lipid transport Chain: B: PDB Molecule:apolipoprotein a-i; PDBTitle: crystal structure of lipid-free human apolipoprotein a-i 10 c3gvmA_ 35.3 7 PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae 11 c2jwaA_ 31.4 38 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 12 d1wa8b1 25.6 11 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 13 d1ryka_ 24.7 5 Fold:SAM domain-like Superfamily:Hypothetical protein YjbJ Family:Hypothetical protein YjbJ 14 c2vs0B_ 23.6 11 PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa 15 d1i6la_ 23.4 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 16 c3prhB_ 22.7 18 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase val144pro mutant from b. subtilis 17 d2ooca1 21.5 14 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:SphA-like 18 c1p58F_ 21.4 15 PDB header:virus Chain: F: PDB Molecule:envelope protein m; PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction 19 c3e0sA_ 21.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 chlorobium tepidum 20 c3lw5K_ 20.1 44 PDB header:photosynthesis Chain: K: PDB Molecule:photosystem i reaction center subunit x psak; PDBTitle: improved model of plant photosystem i 21 c2l5bA_ not modelled 19.4 29 PDB header:apoptosis Chain: A: PDB Molecule:activator of apoptosis harakiri; PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles 22 d2gtsa1 not modelled 17.1 16 Fold:Ferritin-like Superfamily:HP0062-like Family:HP0062-like 23 d1wa8a1 not modelled 16.7 12 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 24 d1nekd_ not modelled 16.5 7 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 25 c3onjA_ not modelled 12.0 9 PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain 26 d1vcsa1 not modelled 11.8 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 27 d1s35a1 not modelled 11.7 12 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 28 d1c99a_ not modelled 10.0 28 Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C 29 c2kncB_ not modelled 9.7 5 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 30 d1eiya1 not modelled 9.5 23 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Phenylalanyl-tRNA synthetase (PheRS) 31 d1k75a_ not modelled 9.3 10 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 32 d1f16a_ not modelled 8.9 21 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 33 c2g36A_ not modelled 8.3 16 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase (ec 6.1.1.2)2 (tryptophan-trna ligase)(trprs) (tm0492) from thermotoga maritima at3 2.50 a resolution 34 c3py7A_ not modelled 7.9 14 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 35 c1n54A_ not modelled 7.8 19 PDB header:rna binding protein Chain: A: PDB Molecule:80 kda nuclear cap binding protein; PDBTitle: cap binding complex m7gpppg free 36 c2kbvA_ not modelled 7.8 30 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm xi of the nhe12 isoform of the na+/h+ exchanger 37 c2j5dA_ not modelled 7.6 16 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: nmr structure of bnip3 transmembrane domain in lipid2 bicelles 38 d1q2ha_ not modelled 7.6 20 Fold:Dimerisation interlock Superfamily:Phenylalanine zipper Family:Adapter protein APS, dimerisation domain 39 c2v8sV_ not modelled 7.2 15 PDB header:protein transport Chain: V: PDB Molecule:vesicle transport through interaction with PDBTitle: vti1b habc domain - epsinr enth domain complex 40 c2ww9B_ not modelled 7.1 21 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 41 c1yi8C_ not modelled 7.1 13 PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl trrna synthetase ii from deinococcus2 radiodurans in complex with l-trp 42 c1q90L_ not modelled 7.1 27 PDB header:photosynthesis Chain: L: PDB Molecule:cytochrome b6f complex subunit petl; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 43 d1q90l_ not modelled 7.1 27 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 44 c1ywwA_ not modelled 6.9 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa4738; PDBTitle: nmr structure of p. aeruginosa protein pa4738: northeast2 structural genomics consortium target pap2 45 c1xq8A_ not modelled 6.8 18 PDB header:lipid binding protein Chain: A: PDB Molecule:alpha-synuclein; PDBTitle: human micelle-bound alpha-synuclein 46 c3hd7A_ not modelled 6.7 14 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 47 c2p2uA_ not modelled 6.6 10 PDB header:dna binding protein Chain: A: PDB Molecule:host-nuclease inhibitor protein gam, putative; PDBTitle: crystal structure of putative host-nuclease inhibitor2 protein gam from desulfovibrio vulgaris 48 d1l2pa_ not modelled 6.5 13 Fold:Single transmembrane helix Superfamily:F1F0 ATP synthase subunit B, membrane domain Family:F1F0 ATP synthase subunit B, membrane domain 49 c3m5wB_ not modelled 6.3 17 PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 campylobacter jejuni 50 c3b9yA_ not modelled 6.3 21 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 51 d1szia_ not modelled 6.1 22 Fold:Four-helical up-and-down bundle Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain 52 d1tqga_ not modelled 6.0 10 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 53 c3kb8A_ not modelled 5.9 14 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp 54 d2o97b1 not modelled 5.6 16 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 55 c2ka2A_ not modelled 5.6 16 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 56 c2ka1B_ not modelled 5.6 16 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 57 c2ks1B_ not modelled 5.5 14 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 58 c2k1lB_ not modelled 5.5 31 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 59 c2k1lA_ not modelled 5.5 31 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 60 c2k1kA_ not modelled 5.5 31 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 61 c2k1kB_ not modelled 5.5 31 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 62 d1dqna_ not modelled 5.5 19 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 63 d1g9sa_ not modelled 5.5 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 64 c2el7A_ not modelled 5.3 25 PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from thermus2 thermophilus 65 c2hroA_ not modelled 5.3 15 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus 66 c2ka2B_ not modelled 5.2 13 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 67 c2ka1A_ not modelled 5.2 13 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles