PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yi8C_

Fold library id	PDB Header	Molecule	Title
c1yi8C_	PDB header: ligase	Chain: C: PDB Molecule: tryptophanyl-trna synthetase;	PDBTitle: crystal structure of tryptophanyl trrna synthetase ii from2 deinococcus radiodurans in complex with l-trp

Links to external resources
Added to library: Tue Mar 16 14:08:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A R P R V L T G D R P T G A L H L G H L A G S L Q N R V R L Q D E A E L F V L L A D V Q A L T D H F D R P E Q V R E N V L A V A L D Y L A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
B T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L D P Q K T T C V V Q S A V P E L A E L T V Y F L N L V T V S H L R Q N P T V K A E I A Q K G Y G E R V P A G F F V Y P V S Q A A D I A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T G G G
T T T S
T
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F G A T L V P V G D D Q L P M L E Q T R E I V R R F N A L Y A P V L A E P Q A Q L S R V P R L P G L D G Q A K M S K S L G N A I A L G D S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T T S
S
S
S S
T T S
S
T T T T
B T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D E V A R K V M G M Y T D P G H L R A S D P G R V E G N P V F T F L D A F D P D P A R V Q A L K D Q Y R A G G L G D V K V K K H L I D V L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S T T S
T T
S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . .

Sequence G V L A P I R T R R A E Y E R D P D A V L R F V T E G T A R G R E V A A Q T L G Q V R R A M R L F G H W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	R	P	R	V	L	T	G	D	R	P	T	G	A	L	H	L	G	H	L	A	G	S	L	Q	N	R	V	R	L	Q	D	E	A	E	L	F	V	L	L	A	D	V	Q	A	L	T	D	H	F	D	R	P	E	Q	V	R	E	N	V	L	A	V	A	L	D	Y	L	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									S	S			B							T											S																T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	D	P	Q	K	T	T	C	V	V	Q	S	A	V	P	E	L	A	E	L	T	V	Y	F	L	N	L	V	T	V	S	H	L	R	Q	N	P	T	V	K	A	E	I	A	Q	K	G	Y	G	E	R	V	P	A	G	F	F	V	Y	P	V	S	Q	A	A	D	I	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			T	T	T						G	G	G		T											T	T	S																			T		T	T								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	G	A	T	L	V	P	V	G	D	D	Q	L	P	M	L	E	Q	T	R	E	I	V	R	R	F	N	A	L	Y	A	P	V	L	A	E	P	Q	A	Q	L	S	R	V	P	R	L	P	G	L	D	G	Q	A	K	M	S	K	S	L	G	N	A	I	A	L	G	D	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T		S						T	T	T																		S		S		S										S	S					T	T	S		S				T	T	T	T				B	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	E	V	A	R	K	V	M	G	M	Y	T	D	P	G	H	L	R	A	S	D	P	G	R	V	E	G	N	P	V	F	T	F	L	D	A	F	D	P	D	P	A	R	V	Q	A	L	K	D	Q	Y	R	A	G	G	L	G	D	V	K	V	K	K	H	L	I	D	V	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T					T	T			S	T	T	S					T	T												S															S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Sequence	G	V	L	A	P	I	R	T	R	R	A	E	Y	E	R	D	P	D	A	V	L	R	F	V	T	E	G	T	A	R	G	R	E	V	A	A	Q	T	L	G	Q	V	R	R	A	M	R	L	F	G	H	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																														T	T		T	T