Secondary structure and disorder prediction

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Sequence		M	Q	Y	T	P	D	T	A	W	K	I	T	G	F	S	R	E	I	S	P	A	Y	R	Q	K	L	L	S	L	G	M	L	P	G	S	S	F	N	V	V	R	V	A	P	L	G	D	P	I	H	I	E	T	R	R	V	S	L	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Sequence		R	K	K	D	L	A	L	L	E	V	E	A	V	S	C
Secondary structure
SS confidence
Disorder														?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gcx chain A domain 1 Region: 1 - 74 Aligned: 74 Modelled: 74 Confidence: 99.9% Identity: 89% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: FeoA-like Phyre2 PDB 2h3j chain A domain 1 Region: 2 - 74 Aligned: 73 Modelled: 73 Confidence: 99.9% Identity: 53% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: FeoA-like Phyre2 PDB 2k5f chain A Region: 2 - 74 Aligned: 71 Modelled: 73 Confidence: 99.8% Identity: 28% PDB header:metal transport Chain: A: PDB Molecule:ferrous iron transport protein a; PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121 Phyre2 PDB 2k5i chain A Region: 2 - 74 Aligned: 71 Modelled: 71 Confidence: 99.8% Identity: 34% PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131 Phyre2 PDB 2k4y chain A Region: 2 - 74 Aligned: 71 Modelled: 73 Confidence: 99.8% Identity: 30% PDB header:metal transport Chain: A: PDB Molecule:feoa-like protein; PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178 Phyre2 PDB 3mhx chain B Region: 2 - 74 Aligned: 70 Modelled: 69 Confidence: 99.7% Identity: 21% PDB header:metal transport Chain: B: PDB Molecule:putative ferrous iron transport protein a; PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor Phyre2 PDB 2k5l chain A Region: 2 - 72 Aligned: 69 Modelled: 71 Confidence: 99.7% Identity: 30% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17 Phyre2 PDB 3e19 chain D Region: 2 - 73 Aligned: 66 Modelled: 72 Confidence: 99.7% Identity: 27% PDB header:transcription regulator, metal binding p Chain: D: PDB Molecule:feoa; PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group Phyre2 PDB 3hru chain A Region: 2 - 73 Aligned: 70 Modelled: 72 Confidence: 99.5% Identity: 10% PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ Phyre2 PDB 1fx7 chain C Region: 2 - 73 Aligned: 70 Modelled: 72 Confidence: 99.0% Identity: 17% PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis Phyre2 PDB 1g3w chain A Region: 2 - 71 Aligned: 64 Modelled: 70 Confidence: 98.4% Identity: 17% PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr Phyre2 PDB 1qw1 chain A Region: 2 - 73 Aligned: 69 Modelled: 72 Confidence: 98.3% Identity: 13% PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226 Phyre2 PDB 1qw1 chain A domain 1 Region: 17 - 73 Aligned: 54 Modelled: 57 Confidence: 91.0% Identity: 15% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: FeoA-like Phyre2 PDB 1qvp chain A Region: 25 - 73 Aligned: 46 Modelled: 49 Confidence: 79.5% Identity: 17% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: FeoA-like Phyre2 PDB 1fx7 chain A domain 3 Region: 18 - 73 Aligned: 55 Modelled: 56 Confidence: 74.7% Identity: 18% Fold: SH3-like barrel Superfamily: C-terminal domain of transcriptional repressors Family: FeoA-like Phyre2 PDB 1aop chain A domain 2 Region: 1 - 36 Aligned: 36 Modelled: 36 Confidence: 49.9% Identity: 11% Fold: Ferredoxin-like Superfamily: Nitrite/Sulfite reductase N-terminal domain-like Family: Duplicated SiR/NiR-like domains 1 and 3 Phyre2 PDB 2ekk chain A Region: 15 - 32 Aligned: 18 Modelled: 18 Confidence: 27.2% Identity: 22% PDB header:protein binding Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase PDBTitle: solution structure of ruh-074, a human uba domain Phyre2 PDB 1hmj chain A Region: 29 - 52 Aligned: 24 Modelled: 24 Confidence: 22.2% Identity: 21% Fold: RPB5-like RNA polymerase subunit Superfamily: RPB5-like RNA polymerase subunit Family: RPB5 Phyre2 PDB 1dzf chain A domain 2 Region: 29 - 53 Aligned: 25 Modelled: 25 Confidence: 21.7% Identity: 20% Fold: RPB5-like RNA polymerase subunit Superfamily: RPB5-like RNA polymerase subunit Family: RPB5 Phyre2 PDB 1o9y chain A Region: 29 - 59 Aligned: 29 Modelled: 31 Confidence: 20.4% Identity: 7% Fold: Surface presentation of antigens (SPOA) Superfamily: Surface presentation of antigens (SPOA) Family: Surface presentation of antigens (SPOA) Phyre2 1 d2gcxa1 2 d2h3ja1 3 c2k5fA_ 4 c2k5iA_ 5 c2k4yA_ 6 c3mhxB_ 7 c2k5lA_ 8 c3e19D_ 9 c3hruA_ 10 c1fx7C_ 11 c1g3wA_ 12 c1qw1A_ 13 d1qw1a1 14 d1qvpa_ 15 d1fx7a3 16 d1aopa2 17 c2ekkA_ 18 d1hmja_ 19 d1dzfa2 20 d1o9ya_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gcxa1 99.9 89 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 2 d2h3ja1 99.9 53 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 3 c2k5fA_ 99.8 28 PDB header:metal transport Chain: A: PDB Molecule:ferrous iron transport protein a; PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121 4 c2k5iA_ 99.8 34 PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131 5 c2k4yA_ 99.8 30 PDB header:metal transport Chain: A: PDB Molecule:feoa-like protein; PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178 6 c3mhxB_ 99.7 21 PDB header:metal transport Chain: B: PDB Molecule:putative ferrous iron transport protein a; PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor 7 c2k5lA_ 99.7 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17 8 c3e19D_ 99.7 27 PDB header:transcription regulator, metal binding p Chain: D: PDB Molecule:feoa; PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group 9 c3hruA_ 99.5 10 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 10 c1fx7C_ 99.0 17 PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis 11 c1g3wA_ 98.4 17 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 12 c1qw1A_ 98.3 13 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226 13 d1qw1a1 91.0 15 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 14 d1qvpa_ 79.5 17 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 15 d1fx7a3 74.7 18 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 16 d1aopa2 49.9 11 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 17 c2ekkA_ 27.2 22 PDB header:protein binding Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase PDBTitle: solution structure of ruh-074, a human uba domain 18 d1hmja_ 22.2 21 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 19 d1dzfa2 21.7 20 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 20 d1o9ya_ 20.4 7 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 21 d1eika_ not modelled 19.7 17 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 22 c2pmzV_ not modelled 18.4 17 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 23 c1zrsB_ not modelled 18.3 19 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase 24 c2dagA_ not modelled 18.0 13 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 25 d1gjja2 not modelled 16.5 18 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 26 d1eeja2 not modelled 15.4 26 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 27 c2iyjA_ not modelled 14.5 26 PDB header:isomerase Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc; PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc 28 d1zj8a1 not modelled 14.0 18 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 29 c1wx6A_ not modelled 13.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cytoplasmic protein nck2; PDBTitle: solution structure of the sh3 domain of the human2 cytoplasmic protein nck2 30 d1h9fa_ not modelled 13.6 25 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 31 c2glwA_ not modelled 13.3 31 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 32 d1y8xb1 not modelled 13.2 21 Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Ubiquitin activating enzymes (UBA) 33 c3h0gE_ not modelled 12.1 24 PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 34 d1jeia_ not modelled 12.1 9 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 35 c2dakA_ not modelled 11.9 13 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 36 d1o6aa_ not modelled 11.6 19 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 37 c3og5A_ not modelled 11.4 14 PDB header:protein binding Chain: A: PDB Molecule:outer membrane protein assembly complex, yaet protein; PDBTitle: crystal structure of bama potra45 tandem 38 d1t3ba2 not modelled 11.3 25 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 39 d1guta_ not modelled 11.1 18 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 40 c1y1yE_ not modelled 10.4 20 PDB header:transferase/transcription/dna-rna hybrid Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii 27 PDBTitle: rna polymerase ii-tfiis-dna/rna complex 41 c2crnA_ not modelled 10.2 35 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 42 d2daha1 not modelled 10.2 44 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 43 d1oqya2 not modelled 10.0 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 44 d2auna2 not modelled 9.9 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 45 d2crna1 not modelled 9.7 38 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 46 d2nzul1 not modelled 9.6 21 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 47 d1veka_ not modelled 9.4 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 48 d3c7bb2 not modelled 9.3 9 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 49 d2bwba1 not modelled 9.2 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 50 d1udxa3 not modelled 8.9 19 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 51 d1ifya_ not modelled 8.8 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 52 c3bkhA_ not modelled 8.7 12 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 53 d2g3qa1 not modelled 8.5 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 54 c2jy5A_ not modelled 8.4 33 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 55 d1wjua_ not modelled 8.4 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 56 c1wr1B_ not modelled 8.2 22 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 57 d1whca_ not modelled 8.1 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 58 c2llgA_ not modelled 8.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of the protein np_814968.1 from enterococcus faecalis 59 c3le1B_ not modelled 8.1 20 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, hpr-related proteins; PDBTitle: crystal structure of apohpr monomer from thermoanaerobacter2 tengcongensis 60 d2dnaa1 not modelled 8.1 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 61 d1cm3a_ not modelled 8.1 21 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 62 d2v4jb2 not modelled 8.0 17 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 63 d1g3wa3 not modelled 7.9 20 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 64 d1veja1 not modelled 7.9 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 65 d2nr4a1 not modelled 7.7 25 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:MTH863-like 66 d1fr3a_ not modelled 7.5 18 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 67 c2dahA_ not modelled 7.5 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 68 c2daiA_ not modelled 7.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 69 c2cwbA_ not modelled 7.1 33 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 70 d2cp8a1 not modelled 7.1 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 71 c2dnaA_ not modelled 6.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 72 d1ka5a_ not modelled 6.9 16 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 73 c3ihsB_ not modelled 6.9 21 PDB header:transport protein Chain: B: PDB Molecule:phosphocarrier protein hpr; PDBTitle: crystal structure of a phosphocarrier protein hpr from2 bacillus anthracis str. ames 74 d2hpra_ not modelled 6.7 21 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 75 d1mo1a_ not modelled 6.7 21 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 76 c2kj6A_ not modelled 6.6 16 PDB header:chaperone Chain: A: PDB Molecule:tubulin folding cofactor b; PDBTitle: nmr solution structure of a tubulin folding cofactor b2 obtained from arabidopsis thaliana: northeast structural3 genomics consortium target ar3436a 77 d1cz5a1 not modelled 6.5 12 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 78 c2ebpA_ not modelled 6.5 9 PDB header:cell adhesion Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sh3 domain from human sam and sh32 domain containing protein 1 79 d1oqya1 not modelled 6.5 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 80 d1udla_ not modelled 6.4 5 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 81 d1wiva_ not modelled 6.4 31 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 82 c1x69A_ not modelled 6.4 11 PDB header:signaling protein Chain: A: PDB Molecule:cortactin isoform a; PDBTitle: solution structures of the sh3 domain of human src2 substrate cortactin 83 d1wx8a1 not modelled 6.4 39 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 84 d1ja1a1 not modelled 6.4 14 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:NADPH-cytochrome p450 reductase FAD-binding domain-like 85 d1qmga2 not modelled 6.2 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 86 c3e4fB_ not modelled 6.2 25 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 87 d1zvvj1 not modelled 6.2 21 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 88 d1h9ra1 not modelled 6.2 27 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 89 d1qr5a_ not modelled 6.1 16 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 90 d2cpwa1 not modelled 6.1 50 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 91 d1h9ra2 not modelled 5.9 12 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 92 d1ptfa_ not modelled 5.8 25 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 93 c2cp8A_ not modelled 5.8 23 PDB header:protein binding Chain: A: PDB Molecule:next to brca1 gene 1 protein; PDBTitle: solution structure of the rsgi ruh-046, a uba domain from2 human next to brca1 gene 1 protein (kiaa0049 protein)3 r923h variant 94 c2kdiA_ not modelled 5.7 17 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin, vacuolar protein sorting-associated PDBTitle: solution structure of a ubiquitin/uim fusion protein 95 c2kzrA_ not modelled 5.7 17 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: solution nmr structure of ubiquitin thioesterase otu1 (ec 3.1.2.-)2 from mus musculus, northeast structural genomics consortium target3 mmt2a 96 d1pcha_ not modelled 5.6 5 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 97 c2lf6A_ not modelled 5.6 33 PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab1; PDBTitle: solution nmr structure of hopabpph1448_220_320 from pseudomonas2 syringae pv. phaseolicola str. 1448a, midwest center for structural3 genomics target apc40132.4 and northeast structural genomics4 consortium target pst3a 98 c1t0yA_ not modelled 5.5 29 PDB header:chaperone Chain: A: PDB Molecule:tubulin folding cofactor b; PDBTitle: solution structure of a ubiquitin-like domain from tubulin-2 binding cofactor b 99 d1t0ya_ not modelled 5.5 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0