Phyre 2 alignment of P0AEL3 with c1y1yE_

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Job Description | P0AEL3
Confidence | 10.37% | Date | Thu Jan 5 11:23:37 GMT 2012
Rank | 40 | Aligned Residues | 25
% Identity | 20% | Template | c1y1yE_
PDB info | PDB header:transferase/transcription/dna-rna hybrid | Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii 27 | PDBTitle: rna polymerase ii-tfiis-dna/rna complex
Resolution | 4.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . |  | . | . | . | . | 50 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query Sequence |  | L | G | M | L | P | G | S | S | F | N | V | V | R | V | A | P | L | . | G | D | P | I | H | I | E | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | G | L | K | R | G | E | V | V | K | I | I | R | K | S | E | T | S | G | R | Y | A | S | Y | R | I
Template Known Secondary structure |  | T | T |  |  | T | T |  |  |  |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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