Phyre 2 Results for P0AEL3

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0AEL3
Date | Thu Jan 5 11:23:37 GMT 2012
Unique Job ID | 4e3b14df6a10616b

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template d2gcxa1
Top template information
Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
Confidence and coverage
Confidence: | 99.9% | Coverage: | 99%
74 residues ( 99% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Q | Y | T | P | D | T | A | W | K | I | T | G | F | S | R | E | I | S | P | A | Y | R | Q | K | L | L | S | L | G | M | L | P | G | S | S | F | N | V | V | R | V | A | P | L | G | D | P | I | H | I | E | T | R | R | V | S | L | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | .
Sequence |  | R | K | K | D | L | A | L | L | E | V | E | A | V | S | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2gcxa1 |

### PDB 2gcx chain A domain 1

Region: 1 - 74
Aligned: 74
Modelled: 74
Confidence: 99.9%
Identity: 89%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2
2 |
| d2h3ja1 |

### PDB 2h3j chain A domain 1

Region: 2 - 74
Aligned: 73
Modelled: 73
Confidence: 99.9%
Identity: 53%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2
3 |
| c2k5fA_ |

### PDB 2k5f chain A

Region: 2 - 74
Aligned: 71
Modelled: 73
Confidence: 99.8%
Identity: 28%
PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron transport protein a;
PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121

Phyre2
4 |
| c2k5iA_ |

### PDB 2k5i chain A

Region: 2 - 74
Aligned: 71
Modelled: 71
Confidence: 99.8%
Identity: 34%
PDB header:metal transport
Chain: A: PDB Molecule:iron transport protein;
PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131

Phyre2
5 |
| c2k4yA_ |

### PDB 2k4y chain A

Region: 2 - 74
Aligned: 71
Modelled: 73
Confidence: 99.8%
Identity: 30%
PDB header:metal transport
Chain: A: PDB Molecule:feoa-like protein;
PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178

Phyre2
6 |
| c3mhxB_ |

### PDB 3mhx chain B

Region: 2 - 74
Aligned: 70
Modelled: 69
Confidence: 99.7%
Identity: 21%
PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor

Phyre2
7 |
| c2k5lA_ |

### PDB 2k5l chain A

Region: 2 - 72
Aligned: 69
Modelled: 71
Confidence: 99.7%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:feoa;
PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17

Phyre2
8 |
| c3e19D_ |

### PDB 3e19 chain D

Region: 2 - 73
Aligned: 66
Modelled: 72
Confidence: 99.7%
Identity: 27%
PDB header:transcription regulator, metal binding p
Chain: D: PDB Molecule:feoa;
PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group

Phyre2
9 |
| c3hruA_ |

### PDB 3hru chain A

Region: 2 - 73
Aligned: 70
Modelled: 72
Confidence: 99.5%
Identity: 10%
PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+

Phyre2
10 |
| c1fx7C_ |

### PDB 1fx7 chain C

Region: 2 - 73
Aligned: 70
Modelled: 72
Confidence: 99.0%
Identity: 17%
PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis

Phyre2
11 |
| c1g3wA_ |

### PDB 1g3w chain A

Region: 2 - 71
Aligned: 64
Modelled: 70
Confidence: 98.4%
Identity: 17%
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr

Phyre2
12 |
| c1qw1A_ |

### PDB 1qw1 chain A

Region: 2 - 73
Aligned: 69
Modelled: 72
Confidence: 98.3%
Identity: 13%
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226

Phyre2
13 |
| d1qw1a1 |

### PDB 1qw1 chain A domain 1

Region: 17 - 73
Aligned: 54
Modelled: 57
Confidence: 91.0%
Identity: 15%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2
14 |
| d1qvpa_ |

### PDB 1qvp chain A

Region: 25 - 73
Aligned: 46
Modelled: 49
Confidence: 79.5%
Identity: 17%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2
15 |
| d1fx7a3 |

### PDB 1fx7 chain A domain 3

Region: 18 - 73
Aligned: 55
Modelled: 56
Confidence: 74.7%
Identity: 18%
Fold: SH3-like barrel
Superfamily: C-terminal domain of transcriptional repressors
Family: FeoA-like

Phyre2
16 |
| d1aopa2 |

### PDB 1aop chain A domain 2

Region: 1 - 36
Aligned: 36
Modelled: 36
Confidence: 49.9%
Identity: 11%
Fold: Ferredoxin-like
Superfamily: Nitrite/Sulfite reductase N-terminal domain-like
Family: Duplicated SiR/NiR-like domains 1 and 3

Phyre2
17 |
| c2ekkA_ |

### PDB 2ekk chain A

Region: 15 - 32
Aligned: 18
Modelled: 18
Confidence: 27.2%
Identity: 22%
PDB header:protein binding
Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase
PDBTitle: solution structure of ruh-074, a human uba domain

Phyre2
18 |
| d1hmja_ |

### PDB 1hmj chain A

Region: 29 - 52
Aligned: 24
Modelled: 24
Confidence: 22.2%
Identity: 21%
Fold: RPB5-like RNA polymerase subunit
Superfamily: RPB5-like RNA polymerase subunit
Family: RPB5

Phyre2
19 |
| d1dzfa2 |

### PDB 1dzf chain A domain 2

Region: 29 - 53
Aligned: 25
Modelled: 25
Confidence: 21.7%
Identity: 20%
Fold: RPB5-like RNA polymerase subunit
Superfamily: RPB5-like RNA polymerase subunit
Family: RPB5

Phyre2
20 |
| d1o9ya_ |

### PDB 1o9y chain A

Region: 29 - 59
Aligned: 29
Modelled: 31
Confidence: 20.4%
Identity: 7%
Fold: Surface presentation of antigens (SPOA)
Superfamily: Surface presentation of antigens (SPOA)
Family: Surface presentation of antigens (SPOA)

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2gcxa1 |
|  | 99.9 | 89 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
2 | d2h3ja1 |
|  | 99.9 | 53 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
3 | c2k5fA_ |
|  | 99.8 | 28 | PDB header:metal transport Chain: A: PDB Molecule:ferrous iron transport protein a; PDBTitle: solution nmr structure of feoa protein from chlorobium2 tepidum. northeast structural genomics consortium target3 ctr121
4 | c2k5iA_ |
|  | 99.8 | 34 | PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131
5 | c2k4yA_ |
|  | 99.8 | 30 | PDB header:metal transport Chain: A: PDB Molecule:feoa-like protein; PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178
6 | c3mhxB_ |
|  | 99.7 | 21 | PDB header:metal transport Chain: B: PDB Molecule:putative ferrous iron transport protein a; PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor
7 | c2k5lA_ |
|  | 99.7 | 30 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17
8 | c3e19D_ |
|  | 99.7 | 27 | PDB header:transcription regulator, metal binding p Chain: D: PDB Molecule:feoa; PDBTitle: crystal structure of iron uptake regulatory protein (feoa) solved by2 sulfur sad in a monoclinic space group
9 | c3hruA_ |
|  | 99.5 | 10 | PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+
10 | c1fx7C_ |
|  | 99.0 | 17 | PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
11 | c1g3wA_ |
|  | 98.4 | 17 | PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr
12 | c1qw1A_ |
|  | 98.3 | 13 | PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226
13 | d1qw1a1 |
|  | 91.0 | 15 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
14 | d1qvpa_ |
|  | 79.5 | 17 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
15 | d1fx7a3 |
|  | 74.7 | 18 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
16 | d1aopa2 |
|  | 49.9 | 11 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
17 | c2ekkA_ |
|  | 27.2 | 22 | PDB header:protein binding Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase PDBTitle: solution structure of ruh-074, a human uba domain
18 | d1hmja_ |
|  | 22.2 | 21 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
19 | d1dzfa2 |
|  | 21.7 | 20 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
20 | d1o9ya_ |
|  | 20.4 | 7 | Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA)
21 | d1eika_ |
| not modelled | 19.7 | 17 | Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5
22 | c2pmzV_ |
| not modelled | 18.4 | 17 | PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
23 | c1zrsB_ |
| not modelled | 18.3 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: wild-type ld-carboxypeptidase
24 | c2dagA_ |
| not modelled | 18.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
25 | d1gjja2 |
| not modelled | 16.5 | 18 | Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain
26 | d1eeja2 |
| not modelled | 15.4 | 26 | Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like
27 | c2iyjA_ |
| not modelled | 14.5 | 26 | PDB header:isomerase Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc; PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc
28 | d1zj8a1 |
| not modelled | 14.0 | 18 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3
29 | c1wx6A_ |
| not modelled | 13.7 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cytoplasmic protein nck2; PDBTitle: solution structure of the sh3 domain of the human2 cytoplasmic protein nck2
30 | d1h9fa_ |
| not modelled | 13.6 | 25 | Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain
31 | c2glwA_ |
| not modelled | 13.3 | 31 | PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
32 | d1y8xb1 |
| not modelled | 13.2 | 21 | Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Ubiquitin activating enzymes (UBA)
33 | c3h0gE_ |
| not modelled | 12.1 | 24 | PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe
34 | d1jeia_ |
| not modelled | 12.1 | 9 | Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain
35 | c2dakA_ |
| not modelled | 11.9 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
36 | d1o6aa_ |
| not modelled | 11.6 | 19 | Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA)
37 | c3og5A_ |
| not modelled | 11.4 | 14 | PDB header:protein binding Chain: A: PDB Molecule:outer membrane protein assembly complex, yaet protein; PDBTitle: crystal structure of bama potra45 tandem
38 | d1t3ba2 |
| not modelled | 11.3 | 25 | Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like
39 | d1guta_ |
| not modelled | 11.1 | 18 | Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP
40 | c1y1yE_ |
| not modelled | 10.4 | 20 | PDB header:transferase/transcription/dna-rna hybrid Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii 27 PDBTitle: rna polymerase ii-tfiis-dna/rna complex
41 | c2crnA_ |
| not modelled | 10.2 | 35 | PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein
42 | d2daha1 |
| not modelled | 10.2 | 44 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
43 | d1oqya2 |
| not modelled | 10.0 | 30 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
44 | d2auna2 |
| not modelled | 9.9 | 19 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like
45 | d2crna1 |
| not modelled | 9.7 | 38 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
46 | d2nzul1 |
| not modelled | 9.6 | 21 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
47 | d1veka_ |
| not modelled | 9.4 | 23 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
48 | d3c7bb2 |
| not modelled | 9.3 | 9 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like
49 | d2bwba1 |
| not modelled | 9.2 | 22 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
50 | d1udxa3 |
| not modelled | 8.9 | 19 | Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain
51 | d1ifya_ |
| not modelled | 8.8 | 25 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
52 | c3bkhA_ |
| not modelled | 8.7 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
53 | d2g3qa1 |
| not modelled | 8.5 | 25 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
54 | c2jy5A_ |
| not modelled | 8.4 | 33 | PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain
55 | d1wjua_ |
| not modelled | 8.4 | 17 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related
56 | c1wr1B_ |
| not modelled | 8.2 | 22 | PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
57 | d1whca_ |
| not modelled | 8.1 | 18 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
58 | c2llgA_ |
| not modelled | 8.1 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of the protein np_814968.1 from enterococcus faecalis
59 | c3le1B_ |
| not modelled | 8.1 | 20 | PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, hpr-related proteins; PDBTitle: crystal structure of apohpr monomer from thermoanaerobacter2 tengcongensis
60 | d2dnaa1 |
| not modelled | 8.1 | 22 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
61 | d1cm3a_ |
| not modelled | 8.1 | 21 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
62 | d2v4jb2 |
| not modelled | 8.0 | 17 | Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like
63 | d1g3wa3 |
| not modelled | 7.9 | 20 | Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like
64 | d1veja1 |
| not modelled | 7.9 | 33 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
65 | d2nr4a1 |
| not modelled | 7.7 | 25 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:MTH863-like
66 | d1fr3a_ |
| not modelled | 7.5 | 18 | Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP
67 | c2dahA_ |
| not modelled | 7.5 | 44 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
68 | c2daiA_ |
| not modelled | 7.3 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1)
69 | c2cwbA_ |
| not modelled | 7.1 | 33 | PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
70 | d2cp8a1 |
| not modelled | 7.1 | 23 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
71 | c2dnaA_ |
| not modelled | 6.9 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
72 | d1ka5a_ |
| not modelled | 6.9 | 16 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
73 | c3ihsB_ |
| not modelled | 6.9 | 21 | PDB header:transport protein Chain: B: PDB Molecule:phosphocarrier protein hpr; PDBTitle: crystal structure of a phosphocarrier protein hpr from2 bacillus anthracis str. ames
74 | d2hpra_ |
| not modelled | 6.7 | 21 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
75 | d1mo1a_ |
| not modelled | 6.7 | 21 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
76 | c2kj6A_ |
| not modelled | 6.6 | 16 | PDB header:chaperone Chain: A: PDB Molecule:tubulin folding cofactor b; PDBTitle: nmr solution structure of a tubulin folding cofactor b2 obtained from arabidopsis thaliana: northeast structural3 genomics consortium target ar3436a
77 | d1cz5a1 |
| not modelled | 6.5 | 12 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like
78 | c2ebpA_ |
| not modelled | 6.5 | 9 | PDB header:cell adhesion Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sh3 domain from human sam and sh32 domain containing protein 1
79 | d1oqya1 |
| not modelled | 6.5 | 20 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
80 | d1udla_ |
| not modelled | 6.4 | 5 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
81 | d1wiva_ |
| not modelled | 6.4 | 31 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
82 | c1x69A_ |
| not modelled | 6.4 | 11 | PDB header:signaling protein Chain: A: PDB Molecule:cortactin isoform a; PDBTitle: solution structures of the sh3 domain of human src2 substrate cortactin
83 | d1wx8a1 |
| not modelled | 6.4 | 39 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related
84 | d1ja1a1 |
| not modelled | 6.4 | 14 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
85 | d1qmga2 |
| not modelled | 6.2 | 31 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
86 | c3e4fB_ |
| not modelled | 6.2 | 25 | PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis
87 | d1zvvj1 |
| not modelled | 6.2 | 21 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
88 | d1h9ra1 |
| not modelled | 6.2 | 27 | Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain
89 | d1qr5a_ |
| not modelled | 6.1 | 16 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
90 | d2cpwa1 |
| not modelled | 6.1 | 50 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
91 | d1h9ra2 |
| not modelled | 5.9 | 12 | Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain
92 | d1ptfa_ |
| not modelled | 5.8 | 25 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
93 | c2cp8A_ |
| not modelled | 5.8 | 23 | PDB header:protein binding Chain: A: PDB Molecule:next to brca1 gene 1 protein; PDBTitle: solution structure of the rsgi ruh-046, a uba domain from2 human next to brca1 gene 1 protein (kiaa0049 protein)3 r923h variant
94 | c2kdiA_ |
| not modelled | 5.7 | 17 | PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin, vacuolar protein sorting-associated PDBTitle: solution structure of a ubiquitin/uim fusion protein
95 | c2kzrA_ |
| not modelled | 5.7 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: solution nmr structure of ubiquitin thioesterase otu1 (ec 3.1.2.-)2 from mus musculus, northeast structural genomics consortium target3 mmt2a
96 | d1pcha_ |
| not modelled | 5.6 | 5 | Fold:HPr-like Superfamily:HPr-like Family:HPr-like
97 | c2lf6A_ |
| not modelled | 5.6 | 33 | PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab1; PDBTitle: solution nmr structure of hopabpph1448_220_320 from pseudomonas2 syringae pv. phaseolicola str. 1448a, midwest center for structural3 genomics target apc40132.4 and northeast structural genomics4 consortium target pst3a
98 | c1t0yA_ |
| not modelled | 5.5 | 29 | PDB header:chaperone Chain: A: PDB Molecule:tubulin folding cofactor b; PDBTitle: solution structure of a ubiquitin-like domain from tubulin-2 binding cofactor b
99 | d1t0ya_ |
| not modelled | 5.5 | 29 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0