Job Description P03004 Confidence 99.62% Date Thu Jan 5 10:57:49 GMT 2012 Rank 71 Aligned Residues 183 % Identity 14% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	.	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y
Query Conservation																																																																		.
Alig confidence																																												.	.	.	.	.																		.
Template Conservation																																												.	.	.	.	.
Template Sequence		D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y
Template Known Secondary structure															S	S		S									S	T	T	S	S													.	.	.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560						.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
		227	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.									.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure					.																		.	.	.	.	.	.	.	.																	.
Query SS confidence					.																		.	.	.	.	.	.	.	.																	.
Query Sequence		R	S	V	.	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	.	.	.	.	.	.	.	.	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	.	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P
Query Conservation					.																		.	.	.	.	.	.	.	.																	.
Alig confidence					.																		.	.	.	.	.	.	.	.																	.															.	.											.	.
Template Conservation																																																														.	.											.	.
Template Sequence		K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q	.	.	E	M	E	M	L	N	A	F	S	T	.	.	T	I	H	V	P	N
Template Known Secondary structure		T	S	S													T	T		B	T	T	T	T	B													T	T				S	T	T										S							.	.		T	T	G	G	G	T	S	S		.	.
Template Predicted Secondary structure																																																														.	.											.	.
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.			.	.	.	.	.	.	660	.	.	.			.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.						.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	.	.	.	.	.	N	V	R	E	L	E	G	A	L	N	R	V
Query Conservation																																					.	.	.	.	.
Alig confidence																		.	.	.	.																.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	.	.	.	.	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure																T		.	.	.	.	S													T	T	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.					.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions