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Job DescriptionP03004
Confidence99.93%DateThu Jan 5 10:57:49 GMT 2012
Rank9Aligned Residues265
% Identity23%Templatec1in8A_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   137..140.........150.........160.........170.........180.........190.........200.........210......
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Query Sequence  TFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQN
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Template Sequence  SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL. . . . . QTNIHVTSGPVLVKQGDM. . . .
Template Known Secondary structure  SGGG

S
T




SSTTSS.....T

TTT

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   23......30.........40.........50.........60.........70..... ....80.........90...
 
   217..220.........230.........240.........250.........260.........270.........280.........290......
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Query Sequence  NAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP
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Template Sequence  . . . AAILTSLERGDVLFIDEIHRLN. . KAVEELLYSAIEDFQIDIQPFTLVGATVRS. . GLLSSPLRSRFGI. . ILELDF
Template Known Secondary structure  ...T

TT
TGGG

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S
G..GGS
TT
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   94.....100.........110..... ....120.........130.........140..... ....150........ .160....
 
   297..300.........310.........320.........330.........340.........350... ......360.........370.....
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Query Sequence  PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA. ITIDFVREALRDLLALQEKLVT
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Template Sequence  YTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLDE
Template Known Secondary structure 

TT

B
TSTT
T
SSB
T

TT


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   180.........190.........200.........210.........220.........230.........240.........250.........
 
   376.. .380.........390.........400.........410.........420.........430.........440........
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Query Sequence  IDN. IQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLR
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Template Sequence  FDRKILKTIIEIYR. . . . . . . . . . . . . . . . . . . . . . . . . . . . GGPVGLNALAASL. GVEADTLSEVYEPYLLQA
Template Known Secondary structure  ST............................T

B
.TS
TTT
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   260.........270... ......280...... ...290.........300....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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