Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	V	R	Q	S	I	H	S	A	H	A	K	T	L	D	T	Q	G	L	R	N	E	F	L	V	E	K	V	F	V	A	D	E	Y	T	M	V	Y	S	H	I	D	R	I	I	V	G	G	I	M	P	I	T	K	T	V	S	V	G
Secondary structure
SS confidence
Disorder		?	?	?		?	?	?							?	?	?																																				?	?		?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	V	G	K	Q	L	G	V	S	Y	F	L	E	R	R	E	L	G	V	I	N	I	G	G	A	G	T	I	T	V	D	G	Q	C	Y	E	I	G	H	R	D	A	L	Y	V	G	K	G	A	K	E	V	V	F	A	S	I	D	T
Secondary structure
SS confidence
Disorder		?	?	?	?																																																						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	T	P	A	K	F	Y	Y	N	C	A	P	A	H	T	T	Y	P	T	K	K	V	T	P	D	E	V	S	P	V	T	L	G	D	N	L	T	S	N	R	R	T	I	N	K	Y	F	V	P	D	V	L	E	T	C	Q	L	S	M	G
Secondary structure
SS confidence
Disorder																												?	?			?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	T	E	L	A	P	G	N	L	W	N	T	M	P	C	H	T	H	E	R	R	M	E	V	Y	F	Y	F	N	M	D	D	D	A	C	V	F	H	M	M	G	Q	P	Q	E	T	R	H	I	V	M	H	N	E	Q	A	V	I	S	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Sequence		S	W	S	I	H	S	G	V	G	T	K	A	Y	T	F	I	W	G	M	V	G	E	N	Q	V	F	D	D	M	D	H	V	A	V	K	D	L	R
Secondary structure
SS confidence
Disorder																																		?			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xru chain A domain 1 Region: 1 - 277 Aligned: 277 Modelled: 275 Confidence: 100.0% Identity: 95% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: KduI-like Phyre2 PDB 1ywk chain A domain 1 Region: 1 - 262 Aligned: 252 Modelled: 262 Confidence: 100.0% Identity: 54% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: KduI-like Phyre2 PDB 1ywk chain E Region: 1 - 262 Aligned: 251 Modelled: 262 Confidence: 100.0% Identity: 54% PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis Phyre2 PDB 2qjv chain B Region: 68 - 272 Aligned: 195 Modelled: 205 Confidence: 100.0% Identity: 17% PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution Phyre2 PDB 1sq4 chain A Region: 50 - 259 Aligned: 192 Modelled: 210 Confidence: 98.9% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1rc6 chain A Region: 57 - 256 Aligned: 172 Modelled: 190 Confidence: 98.9% Identity: 17% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sef chain A Region: 57 - 259 Aligned: 184 Modelled: 201 Confidence: 98.8% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis Phyre2 PDB 1sef chain A Region: 57 - 259 Aligned: 184 Modelled: 201 Confidence: 98.8% Identity: 9% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1sfn chain A Region: 77 - 256 Aligned: 162 Modelled: 172 Confidence: 98.6% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 1y3t chain A domain 1 Region: 33 - 259 Aligned: 206 Modelled: 224 Confidence: 98.4% Identity: 17% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Quercetin 2,3-dioxygenase-like Phyre2 PDB 3rns chain A Region: 77 - 259 Aligned: 150 Modelled: 144 Confidence: 98.3% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis Phyre2 PDB 2d40 chain C Region: 77 - 258 Aligned: 166 Modelled: 169 Confidence: 98.1% Identity: 13% PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 Phyre2 PDB 2phd chain A domain 1 Region: 81 - 258 Aligned: 166 Modelled: 175 Confidence: 98.1% Identity: 13% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 2d40 chain A domain 1 Region: 80 - 245 Aligned: 153 Modelled: 166 Confidence: 98.0% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 PDB 3h7y chain A Region: 77 - 259 Aligned: 159 Modelled: 170 Confidence: 98.0% Identity: 13% PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form Phyre2 PDB 3myx chain A Region: 80 - 243 Aligned: 146 Modelled: 156 Confidence: 97.8% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution Phyre2 PDB 2vqa chain C Region: 80 - 263 Aligned: 176 Modelled: 184 Confidence: 97.5% Identity: 15% PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. Phyre2 PDB 2vpv chain A Region: 22 - 131 Aligned: 91 Modelled: 102 Confidence: 97.4% Identity: 14% PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p Phyre2 PDB 3bu7 chain A Region: 81 - 259 Aligned: 168 Modelled: 179 Confidence: 97.4% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi Phyre2 PDB 3bu7 chain A domain 1 Region: 81 - 259 Aligned: 168 Modelled: 179 Confidence: 97.4% Identity: 20% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Gentisate 1,2-dioxygenase-like Phyre2 1 d1xrua1 2 d1ywka1 3 c1ywkE_ 4 c2qjvB_ 5 d1sq4a_ 6 d1rc6a_ 7 c1sefA_ 8 d1sefa_ 9 d1sfna_ 10 d1y3ta1 11 c3rnsA_ 12 c2d40C_ 13 d2phda1 14 d2d40a1 15 c3h7yA_ 16 c3myxA_ 17 c2vqaC_ 18 c2vpvA_ 19 c3bu7A_ 20 d3bu7a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1xrua1 100.0 95 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 2 d1ywka1 100.0 54 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 3 c1ywkE_ 100.0 54 PDB header:isomerase Chain: E: PDB Molecule:4-deoxy-l-threo-5-hexosulose-uronate ketol- PDBTitle: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate2 ketol-isomerase from enterococcus faecalis 4 c2qjvB_ 100.0 17 PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution 5 d1sq4a_ 98.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 6 d1rc6a_ 98.9 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 7 c1sefA_ 98.8 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 8 d1sefa_ 98.8 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 9 d1sfna_ 98.6 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 10 d1y3ta1 98.4 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 11 c3rnsA_ 98.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 12 c2d40C_ 98.1 13 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 13 d2phda1 98.1 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 14 d2d40a1 98.0 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 15 c3h7yA_ 98.0 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 16 c3myxA_ 97.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 17 c2vqaC_ 97.5 15 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 18 c2vpvA_ 97.4 14 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 19 c3bu7A_ 97.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 20 d3bu7a1 97.4 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 21 c2gu9B_ not modelled 97.4 15 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 22 d1j58a_ not modelled 97.3 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 23 c3cewA_ not modelled 97.1 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 24 c2cauA_ not modelled 97.0 13 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 25 c3ht2A_ not modelled 96.9 19 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 26 c3jzvA_ not modelled 96.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 27 c3i7dB_ not modelled 96.9 18 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 28 d2pyta1 not modelled 96.9 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 29 c3lwcA_ not modelled 96.8 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 30 d1y9qa2 not modelled 96.8 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 31 d2arca_ not modelled 96.7 20 Fold:Double-stranded beta-helix Superfamily:Regulatory protein AraC Family:Regulatory protein AraC 32 c2oa2A_ not modelled 96.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 33 d1v70a_ not modelled 96.6 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 34 d1lr5a_ not modelled 96.6 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 35 c3kgzA_ not modelled 96.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 36 c3ibmB_ not modelled 96.5 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 37 c3h8uA_ not modelled 96.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 38 c3l2hD_ not modelled 96.3 19 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 39 c2pfwB_ not modelled 96.2 16 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 40 c3fjsC_ not modelled 96.1 24 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 41 d1o4ta_ not modelled 96.1 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 42 d2b8ma1 not modelled 95.7 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 43 c3d82A_ not modelled 95.5 15 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 44 c2o8qA_ not modelled 95.4 10 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 45 d1yhfa1 not modelled 94.9 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 46 d2f4pa1 not modelled 94.6 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 47 c2eaaB_ not modelled 94.5 12 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 48 c2q30C_ not modelled 94.2 17 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 49 c3bcwB_ not modelled 94.0 18 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 50 c2i45C_ not modelled 94.0 11 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 51 d1uika1 not modelled 93.8 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 52 c2ozjB_ not modelled 93.6 18 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 53 d1o5ua_ not modelled 93.5 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 54 d1dgwa_ not modelled 93.4 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 55 d1vj2a_ not modelled 93.1 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 56 d1uija1 not modelled 92.6 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 57 c1ey2A_ not modelled 92.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:homogentisate 1,2-dioxygenase; PDBTitle: human homogentisate dioxygenase with fe(ii) 58 d1eyba_ not modelled 92.4 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Homogentisate dioxygenase 59 d1pmia_ not modelled 92.1 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 60 c2oziA_ not modelled 91.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 61 d1j3pa_ not modelled 91.3 23 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 62 c2fqpD_ not modelled 90.7 11 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 63 c3s7eB_ not modelled 88.1 14 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 64 c1uijA_ not modelled 87.6 15 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 65 c3h1yA_ not modelled 87.4 16 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 66 d1juha_ not modelled 86.5 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 67 d1zx5a1 not modelled 86.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 68 d1x82a_ not modelled 86.1 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 69 c2opkC_ not modelled 85.3 20 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 70 d1qwra_ not modelled 85.1 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 71 c3kglB_ not modelled 83.8 21 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 72 c3es4B_ not modelled 83.2 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 73 c2bnoA_ not modelled 78.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 74 c1y9qA_ not modelled 70.8 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 75 d1od5a2 not modelled 68.5 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 76 c3eo6B_ not modelled 64.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 77 c2qnkA_ not modelled 64.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase; PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase 78 d1yfua1 not modelled 63.0 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 79 c2xlfA_ not modelled 61.7 19 PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet) 80 c3es1A_ not modelled 61.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 81 c1cauB_ not modelled 61.4 28 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 82 d2phla2 not modelled 59.5 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 83 c3qacA_ not modelled 57.9 17 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 84 d2et1a1 not modelled 53.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 85 d1fxza1 not modelled 51.3 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 86 d1uija2 not modelled 48.4 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 87 d2bnma2 not modelled 48.3 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 88 c2xdvA_ not modelled 43.2 15 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 89 c2k5hA_ not modelled 32.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 90 d2oyza1 not modelled 32.7 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 91 c3hqxA_ not modelled 31.2 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 92 d1zrra1 not modelled 30.8 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 93 d2exda1 not modelled 30.7 13 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 94 d1vrba1 not modelled 30.4 20 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 95 c2ko2A_ not modelled 29.0 33 PDB header:membrane protein Chain: A: PDB Molecule:reticulon-4; PDBTitle: nogo66 96 c3kscD_ not modelled 28.7 14 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 97 c3al6A_ not modelled 26.3 13 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 98 d1fxza2 not modelled 25.4 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 99 c2d5fB_ not modelled 23.9 10 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 100 d1od5a1 not modelled 23.4 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 101 c2b9sB_ not modelled 21.4 50 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0