Job Description P39280 Confidence 99.87% Date Thu Jan 5 11:58:50 GMT 2012 Rank 2 Aligned Residues 282 % Identity 15% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	D	W	L	T	Q	L	A	D	V	V	T	D	P	D	E	L	L	R	L	L	N	I	D	A	E	E	K	L	L	A	G	R	S	A	K	K	L	F	A	L	R	V	P	R	S	F	I	D	R	M	E	K	G	N	P	D	D	P	L	L	R	Q	V	L	T	S	Q	D	E	F	V	I	A	P	G	F	S	T
Query Conservation
Alig confidence																							.	.	.	.																										.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.																										.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Q	V	M	K	W	M	Y	H	Y	C	C	D	N	F	D	E	M	T	D	I	.	.	.	.	N	K	V	L	R	G	K	L	K	E	V	A	E	I	R	A	P	E	V	V	E	E	Q	R	S	.	.	.	.	.	.	.	S	D	G	T	I	K	W	A	I	A	V	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S					G	G	G		T	T	S	.	.	.	.																										.	.	.	.	.	.	.	T	T	S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.																										.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.	.	.	.	160	.
Predicted Secondary structure																													.	.																																			.	.	.	.	.	.	.	.
Query SS confidence																													.	.																																			.	.	.	.	.	.	.	.
Query Sequence		D	P	L	E	E	Q	H	S	V	V	P	G	L	L	H	K	Y	H	N	R	A	L	L	L	V	K	G	.	.	G	C	A	V	N	C	R	Y	C	F	R	R	H	F	P	Y	A	E	N	Q	G	N	K	R	N	W	Q	T	A	L	E	Y	V	A	.	.	.	.	.	.	.	.	A	H	P	E	L	D	E	M	I
Query Conservation																													.	.																																			.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.					.																			.	.																																			.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.					.
Template Sequence		.	.	.	.	G	D	Q	R	.	V	E	T	V	Y	I	P	E	D	D	R	A	T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	S	T	A	Q	Q	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V
Template Known Secondary structure		.	.	.	.	T	T			.									S	S													S	S			T	T		G	G	G	T	T																													S	S		S		S
Template Predicted Secondary structure		.	.	.	.					.
Template SS confidence
						100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	G	G	D	P	L	M	A	K	D	H	E	L	D	W	L	L	T	Q	L	E	A	I	P	H	I	K	R	L	R	I	H	S	R	L	P	I	V	I	P	A	R	I	T	E	A	L	V	E	C	F	A	R	S	T	L	Q	I	L	L	V	N	H	I	N	H	A	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.
Template Sequence		M	M	G	M	G	E	P	L	L	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	.	.	.	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K
Template Known Secondary structure				S	S	S		G	G	G														S	T	T	T	T		.	.	.			G	G	G						S																								S	S								S	G	G	G	G	T
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	N	E	V	D	E	T	F	R	Q	A	M	A	K	L	R	R	V	G	V	T	L	L	N	Q	S	V	L	L	R	D	V	N	D	N	A	Q	T	L	A	N	L	S	N	A	L	F	D	A	G	V	M	P	Y	Y	L	H	V	L	D	K	V	Q	G	A	A	H	F	M	V	S	D	D	E	A	R	Q	I
Query Conservation		.	.	.
Alig confidence		.	.	.																																																					.
Template Conservation																																																									.
Template Sequence		Y	N	I	E	T	F	L	A	A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	K	I	.	N	L	I	P	W	N	P	F	P	G	A	P	Y	G	R	S	S	N	S	R	I	D	R	F
Template Known Secondary structure		S																	T	T	T	T	T									B	T	T	T	T		S											T	T	T	S					.									T	T					B
Template Predicted Secondary structure																																																									.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	E	L	L	T	L	V	S	G	Y	L	V	P	K	L	A	R	E	I	G	G	E
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		S	K	V	L	M	S	Y	.	.	.	.	G	F	T	T	I	V	R	K	T	R	G	D
Template Known Secondary structure								T	.	.	.	.	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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