Email l.a.kelley@imperial.ac.uk Description P24238 Date Thu Jan 5 11:41:30 GMT 2012 Unique Job ID 487b86ac62c4039b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2if6a1 100.0 25 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 2 c3kw0D_ 100.0 21 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 3 c2p1gA_ 98.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 4 c3h41A_ 97.5 19 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 5 c2k1gA_ 97.5 22 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 6 c2kytA_ 97.3 16 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 7 c2fg0B_ 97.3 27 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 8 d2evra2 97.2 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 9 c2im9A_ 97.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 10 d2im9a1 97.0 13 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like 11 c3gt2A_ 97.0 10 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 12 c2xivA_ 96.7 18 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 13 c3i86A_ 96.7 12 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 14 c3pbiA_ 96.5 16 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 15 c3npfB_ 96.1 16 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 16 d2io8a2 93.0 25 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 17 c3m1uB_ 91.0 19 PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution 18 c2vpmB_ 83.5 24 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 19 c2ioaA_ 83.1 26 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 20 c2k3aA_ 66.9 26 PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 21 d1wh7a_ not modelled 44.2 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 22 d1igna2 not modelled 41.0 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of rap1 23 d1wfza_ not modelled 29.0 35 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 24 c3nnlB_ not modelled 27.2 33 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 25 c2z7eB_ not modelled 25.4 12 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 26 d2glza1 not modelled 22.5 10 Fold:FwdE/GAPDH domain-like Superfamily:FwdE-like Family:FwdE-like 27 d2gy9q1 not modelled 19.3 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 28 d1hkva1 not modelled 18.0 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 29 d1wpna_ not modelled 17.1 15 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 30 d1vbga2 not modelled 15.4 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 31 c1khiA_ not modelled 15.2 15 PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1 32 d1h2ka_ not modelled 14.7 24 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 33 d2z1ea2 not modelled 14.7 24 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 34 c2zkqq_ not modelled 14.2 30 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 35 d1khia1 not modelled 13.5 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 36 d1zyma2 not modelled 13.3 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system 37 c3bbnQ_ not modelled 13.3 15 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 38 c3zvmA_ not modelled 13.0 19 PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase 39 d1r9pa_ not modelled 12.7 29 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 40 c2obnA_ not modelled 12.6 19 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution 41 d1k20a_ not modelled 12.4 26 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 42 d1asua_ not modelled 12.4 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 43 c3k1rA_ not modelled 12.1 19 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 44 d1kbla2 not modelled 11.8 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 45 c1s1hQ_ not modelled 11.6 20 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 46 c3k2oB_ not modelled 11.6 41 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 47 d1h6za2 not modelled 11.6 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 48 c2x35A_ not modelled 11.5 13 PDB header:transcription Chain: A: PDB Molecule:peregrin; PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp2 domain of brpf1. 49 c2zpmA_ not modelled 11.3 16 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 50 d1xjsa_ not modelled 11.3 12 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 51 c2opwA_ not modelled 11.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 52 d2qamc2 not modelled 10.8 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 53 d1rl2a2 not modelled 10.7 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 54 c1zx6A_ not modelled 10.5 17 PDB header:protein binding Chain: A: PDB Molecule:ypr154wp; PDBTitle: high-resolution crystal structure of yeast pin3 sh3 domain 55 d2uubq1 not modelled 10.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 56 d1vcta2 not modelled 10.2 8 Fold:TrkA C-terminal domain-like Superfamily:TrkA C-terminal domain-like Family:TrkA C-terminal domain-like 57 d2hawa1 not modelled 9.8 15 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 58 d1su0b_ not modelled 9.5 35 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 59 d1i94q_ not modelled 9.3 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 60 c1ezaA_ not modelled 9.0 12 PDB header:phosphotransferase Chain: A: PDB Molecule:enzyme i; PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure 61 d2f4pa1 not modelled 9.0 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 62 d1ripa_ not modelled 8.8 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 63 c2wkdA_ not modelled 8.7 27 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 64 d2fcta1 not modelled 8.7 13 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 65 d2hg6a1 not modelled 8.6 50 Fold:PA1123-like Superfamily:PA1123-like Family:PA1123-like 66 d1i74a_ not modelled 8.3 28 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 67 c3mt1B_ not modelled 8.2 15 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 68 d1ntha_ not modelled 8.1 10 Fold:TIM beta/alpha-barrel Superfamily:Monomethylamine methyltransferase MtmB Family:Monomethylamine methyltransferase MtmB 69 d1vrba1 not modelled 8.0 6 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 70 d2nlua1 not modelled 8.0 38 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 71 d2zoda2 not modelled 8.0 6 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 72 d1hyoa2 not modelled 7.6 17 Fold:FAH Superfamily:FAH Family:FAH 73 d1wpga1 not modelled 7.4 28 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 74 c3al6A_ not modelled 7.3 41 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 75 c1nhgD_ not modelled 7.2 9 PDB header:oxidoreductase Chain: D: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: crystal structure analysis of plasmodium falciparum enoyl-2 acyl-carrier-protein reductase with triclosan 76 d1fc6a3 not modelled 7.2 30 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Tail specific protease PDZ domain 77 c1yj5B_ not modelled 7.1 19 PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 78 c2yy8B_ not modelled 7.0 12 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 79 d1sota1 not modelled 6.9 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 80 d1h3za_ not modelled 6.9 25 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 81 d1cz5a1 not modelled 6.8 38 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 82 d1knwa1 not modelled 6.8 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 83 c1i7oC_ not modelled 6.8 17 PDB header:isomerase, lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional PDBTitle: crystal structure of hpce 84 d1d7ka1 not modelled 6.7 21 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 85 c2hc8A_ not modelled 6.6 33 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 86 c4a1bO_ not modelled 6.5 24 PDB header:ribosome Chain: O: PDB Molecule:rpl28; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3. 87 c2p3wB_ not modelled 6.4 27 PDB header:protein binding Chain: B: PDB Molecule:probable serine protease htra3; PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv) 88 c3c9qA_ not modelled 6.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein c8orf32; PDBTitle: crystal structure of the uncharacterized human protein c8orf32 with2 bound peptide 89 d1l0wa2 not modelled 6.2 30 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 90 c3d3rA_ not modelled 6.1 23 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 91 d1clia2 not modelled 6.1 13 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 92 d2eyqa1 not modelled 6.1 35 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 93 d1vi6a_ not modelled 6.1 14 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 94 c2qniA_ not modelled 6.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu0299; PDBTitle: crystal structure of uncharacterized protein atu0299 95 c1yfsB_ not modelled 5.9 22 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 96 d1ky9a1 not modelled 5.9 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 97 c2j5uB_ not modelled 5.8 20 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 98 c2qq4A_ not modelled 5.8 29 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 99 c2hw2A_ not modelled 5.8 44 PDB header:transferase Chain: A: PDB Molecule:rifampin adp-ribosyl transferase; PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin