Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	H	A	P	H	L	Y	F	A	W	Q	Q	L	V	E	K	S	Q	L	M	L	R	L	A	T	E	E	Q	W	D	E	L	I	A	S	E	M	A	Y	V	N	A	V	Q	E	I	A	H	L	T	E	E	V	D	P	S	T	T	M
Secondary structure
SS confidence
Disorder		?	?	?	?																																													?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	E	Q	L	R	P	M	L	R	L	I	L	D	N	E	S	K	V	K	Q	L	L	Q	I	R	M	D	E	L	A	K	L	V	G	Q	S	S	V	Q	K	S	V	L	S	A	Y	G	D	Q	G	G	F	V	L	A	P	Q	D	N	L
Secondary structure
SS confidence
Disorder																																																			?	?				?	?	?	?	?	?
Disorder confidence
		.
Sequence		F
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3a7m chain A Region: 2 - 116 Aligned: 115 Modelled: 115 Confidence: 100.0% Identity: 33% PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid Phyre2 PDB 3nkz chain D Region: 3 - 93 Aligned: 91 Modelled: 91 Confidence: 100.0% Identity: 43% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:flagellar protein flit; PDBTitle: the crystal structure of a flagella protein from yersinia2 enterocolitica subsp. enterocolitica 8081 Phyre2 PDB 3h3m chain B Region: 6 - 93 Aligned: 82 Modelled: 88 Confidence: 99.9% Identity: 20% PDB header:structural genomics Chain: B: PDB Molecule:flagellar protein flit; PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica Phyre2 PDB 3bc1 chain F Region: 65 - 103 Aligned: 39 Modelled: 39 Confidence: 40.2% Identity: 13% PDB header:signaling protein/transport protein Chain: F: PDB Molecule:synaptotagmin-like protein 2; PDBTitle: crystal structure of the complex rab27a-slp2a Phyre2 PDB 2f86 chain B domain 1 Region: 12 - 36 Aligned: 25 Modelled: 25 Confidence: 31.5% Identity: 16% Fold: Cystatin-like Superfamily: NTF2-like Family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A Phyre2 PDB 3bi8 chain A Region: 16 - 71 Aligned: 56 Modelled: 56 Confidence: 28.6% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum Phyre2 PDB 1wr0 chain A domain 1 Region: 1 - 83 Aligned: 77 Modelled: 83 Confidence: 27.0% Identity: 18% Fold: Spectrin repeat-like Superfamily: MIT domain Family: MIT domain Phyre2 PDB 2ux0 chain A domain 1 Region: 12 - 36 Aligned: 25 Modelled: 25 Confidence: 25.2% Identity: 4% Fold: Cystatin-like Superfamily: NTF2-like Family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A Phyre2 PDB 3k17 chain A Region: 3 - 70 Aligned: 67 Modelled: 68 Confidence: 23.3% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:lin0012 protein; PDBTitle: crystal structure of a lin0012 protein from listeria innocua Phyre2 PDB 2a1j chain A domain 1 Region: 68 - 108 Aligned: 41 Modelled: 41 Confidence: 22.3% Identity: 17% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: Hef domain-like Phyre2 PDB 3fsd chain A Region: 12 - 36 Aligned: 25 Modelled: 25 Confidence: 21.1% Identity: 4% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake; PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution Phyre2 PDB 1hkx chain A Region: 12 - 36 Aligned: 25 Modelled: 25 Confidence: 20.9% Identity: 4% Fold: Cystatin-like Superfamily: NTF2-like Family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A Phyre2 PDB 3flu chain D Region: 16 - 71 Aligned: 56 Modelled: 56 Confidence: 17.5% Identity: 14% PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis Phyre2 PDB 3ech chain C Region: 18 - 31 Aligned: 14 Modelled: 14 Confidence: 16.5% Identity: 29% PDB header:transcription, transcription regulation Chain: C: PDB Molecule:25-mer fragment of protein armr; PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr Phyre2 PDB 2r4i chain A domain 1 Region: 12 - 36 Aligned: 25 Modelled: 25 Confidence: 16.0% Identity: 8% Fold: Cystatin-like Superfamily: NTF2-like Family: CHU142-like Phyre2 PDB 1k47 chain A domain 2 Region: 9 - 70 Aligned: 57 Modelled: 57 Confidence: 15.1% Identity: 12% Fold: Ferredoxin-like Superfamily: GHMP Kinase, C-terminal domain Family: Phosphomevalonate kinase (PMK) Phyre2 PDB 1wuu chain A domain 2 Region: 56 - 107 Aligned: 50 Modelled: 52 Confidence: 14.1% Identity: 18% Fold: Ferredoxin-like Superfamily: GHMP Kinase, C-terminal domain Family: Galactokinase Phyre2 PDB 3s5o chain A Region: 16 - 71 Aligned: 56 Modelled: 56 Confidence: 13.8% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial; PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate Phyre2 PDB 3na8 chain A Region: 16 - 71 Aligned: 56 Modelled: 56 Confidence: 13.5% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa Phyre2 PDB 1sr2 chain A Region: 12 - 47 Aligned: 36 Modelled: 36 Confidence: 12.9% Identity: 8% Fold: Four-helical up-and-down bundle Superfamily: Histidine-containing phosphotransfer domain, HPT domain Family: Sensor-like histidine kinase YojN, C-terminal domain Phyre2 1 c3a7mA_ 2 c3nkzD_ 3 c3h3mB_ 4 c3bc1F_ 5 d2f86b1 6 c3bi8A_ 7 d1wr0a1 8 d2ux0a1 9 c3k17A_ 10 d2a1ja1 11 c3fsdA_ 12 d1hkxa_ 13 c3fluD_ 14 c3echC_ 15 d2r4ia1 16 d1k47a2 17 d1wuua2 18 c3s5oA_ 19 c3na8A_ 20 d1sr2a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3a7mA_ 100.0 33 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid 2 c3nkzD_ 100.0 43 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:flagellar protein flit; PDBTitle: the crystal structure of a flagella protein from yersinia2 enterocolitica subsp. enterocolitica 8081 3 c3h3mB_ 99.9 20 PDB header:structural genomics Chain: B: PDB Molecule:flagellar protein flit; PDBTitle: crystal structure of flagellar protein flit from bordetella2 bronchiseptica 4 c3bc1F_ 40.2 13 PDB header:signaling protein/transport protein Chain: F: PDB Molecule:synaptotagmin-like protein 2; PDBTitle: crystal structure of the complex rab27a-slp2a 5 d2f86b1 31.5 16 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 6 c3bi8A_ 28.6 16 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum 7 d1wr0a1 27.0 18 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 8 d2ux0a1 25.2 4 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 9 c3k17A_ 23.3 12 PDB header:transferase Chain: A: PDB Molecule:lin0012 protein; PDBTitle: crystal structure of a lin0012 protein from listeria innocua 10 d2a1ja1 22.3 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 11 c3fsdA_ 21.1 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake; PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution 12 d1hkxa_ 20.9 4 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 13 c3fluD_ 17.5 14 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis 14 c3echC_ 16.5 29 PDB header:transcription, transcription regulation Chain: C: PDB Molecule:25-mer fragment of protein armr; PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr 15 d2r4ia1 16.0 8 Fold:Cystatin-like Superfamily:NTF2-like Family:CHU142-like 16 d1k47a2 15.1 12 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 17 d1wuua2 14.1 18 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 18 c3s5oA_ 13.8 16 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial; PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate 19 c3na8A_ 13.5 16 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa 20 d1sr2a_ 12.9 8 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Sensor-like histidine kinase YojN, C-terminal domain 21 c2ehhE_ not modelled 12.6 14 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 22 c3si9B_ not modelled 12.1 11 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae 23 c3lciA_ not modelled 12.1 7 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 24 c2hz8A_ not modelled 12.1 29 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed diiron protein; PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein 25 d1yqha1 not modelled 11.6 16 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 26 d2crua1 not modelled 11.4 18 Fold:RuvA C-terminal domain-like Superfamily:Double-stranded DNA-binding domain Family:Double-stranded DNA-binding domain 27 c2ka3C_ not modelled 11.3 20 PDB header:structural protein Chain: C: PDB Molecule:emilin-1; PDBTitle: structure of emilin-1 c1q-like domain 28 c1u7mB_ not modelled 11.2 24 PDB header:de novo protein Chain: B: PDB Molecule:four-helix bundle model; PDBTitle: solution structure of a diiron protein model: due ferri(ii)2 turn mutant 29 c1zvuA_ not modelled 11.2 28 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 30 d1wn0a1 not modelled 10.6 11 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Phosphorelay protein-like 31 d2cpta1 not modelled 10.6 18 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 32 d1e9ya2 not modelled 10.5 11 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 33 d1vk8a_ not modelled 10.4 6 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 34 d1ug7a_ not modelled 10.1 15 Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein 35 d1lxja_ not modelled 10.0 16 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 36 c3qgaD_ not modelled 9.8 11 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 37 c3eb2A_ not modelled 9.3 20 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution 38 d3en8a1 not modelled 9.3 8 Fold:Cystatin-like Superfamily:NTF2-like Family:Rpa4348-like 39 c2zetD_ not modelled 9.1 9 PDB header:signaling protein Chain: D: PDB Molecule:melanophilin; PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin 40 c3efgA_ not modelled 9.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein slyx homolog; PDBTitle: structure of slyx protein from xanthomonas campestris pv. campestris2 str. atcc 33913 41 c1e9zA_ not modelled 9.0 11 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 42 c3gzrA_ not modelled 9.0 4 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold; PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution 43 c2epiA_ not modelled 8.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0045 protein mj1052; PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2) 44 d1ngka_ not modelled 8.5 8 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 45 d1ejxa_ not modelled 8.4 11 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 46 c3robC_ not modelled 8.3 8 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776 47 d4ubpa_ not modelled 7.9 5 Fold:Urease, gamma-subunit Superfamily:Urease, gamma-subunit Family:Urease, gamma-subunit 48 c2oi2A_ not modelled 7.6 13 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: streptococcus pneumoniae mevalonate kinase in complex with2 diphosphomevalonate 49 c2yxgD_ not modelled 7.5 14 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 50 d2a0ba_ not modelled 7.0 11 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Aerobic respiration control sensor protein, ArcB 51 c2fvhB_ not modelled 6.8 11 PDB header:hydrolase Chain: B: PDB Molecule:urease gamma subunit; PDBTitle: crystal structure of rv1848, a urease gamma subunit urea (urea2 amidohydrolase), from mycobacterium tuberculosis 52 d2g3ba2 not modelled 6.7 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 53 c3f7sA_ not modelled 6.6 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution 54 d1yvia1 not modelled 6.5 14 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Phosphorelay protein-like 55 c2v6xA_ not modelled 6.4 17 PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: stractural insight into the interaction between escrt-iii2 and vps4 56 d1xsfa1 not modelled 6.4 21 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:RPF-like 57 d1yzma1 not modelled 6.2 13 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 58 c1fi4A_ not modelled 6.2 7 PDB header:lyase Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase; PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution. 59 c3hx8A_ not modelled 6.2 0 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase2 (np_103587.1) from mesorhizobium loti at 1.45 a resolution 60 d2iboa1 not modelled 6.1 17 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 61 c3jw4C_ not modelled 6.0 19 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family; PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum 62 d2g5ca1 not modelled 6.0 12 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:TyrA dimerization domain-like 63 c2rfgB_ not modelled 5.8 13 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution 64 d3b8la1 not modelled 5.7 7 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 65 d1s5aa_ not modelled 5.7 7 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 66 c1k47F_ not modelled 5.4 5 PDB header:transferase Chain: F: PDB Molecule:phosphomevalonate kinase; PDBTitle: crystal structure of the streptococcus pneumoniae2 phosphomevalonate kinase (pmk) 67 d1y6da_ not modelled 5.4 13 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Phosphorelay protein luxU 68 c2xcqA_ not modelled 5.4 20 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase 69 d1m98a1 not modelled 5.3 18 Fold:Orange carotenoid protein, N-terminal domain Superfamily:Orange carotenoid protein, N-terminal domain Family:Orange carotenoid protein, N-terminal domain 70 c1m98A_ not modelled 5.3 15 PDB header:unknown function Chain: A: PDB Molecule:orange carotenoid protein; PDBTitle: crystal structure of orange carotenoid protein 71 d1z05a2 not modelled 5.2 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 72 d1o5ka_ not modelled 5.2 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 73 c2rrlA_ not modelled 5.2 19 PDB header:protein transport Chain: A: PDB Molecule:flagellar hook-length control protein; PDBTitle: solution structure of the c-terminal domain of the flik 74 d1zbdb_ not modelled 5.1 13 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 75 d1q3ma_ not modelled 5.1 39 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 76 c1u6tA_ not modelled 5.1 5 PDB header:protein binding, signaling protein Chain: A: PDB Molecule:sh3 domain-binding glutamic acid-rich-like PDBTitle: crystal structure of the human sh3 binding glutamic-rich2 protein like 77 c3q4iA_ not modelled 5.0 24 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 78 d2cqea1 not modelled 5.0 25 Fold:CCCH zinc finger Superfamily:CCCH zinc finger Family:CCCH zinc finger 79 c3g0eA_ not modelled 5.0 5 PDB header:transferase Chain: A: PDB Molecule:mast/stem cell growth factor receptor; PDBTitle: kit kinase domain in complex with sunitinib 80 d1q8ha_ not modelled 5.0 38 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0