Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	D	A	I	I	K	P	F	K	L	D	D	V	R	E	A	L	A	E	V	G	I	T	G	M	T	V	T	E	V	K	G	F	G	R	Q	K	G	H	T	E	L	Y	R	G	A	E	Y	M	V	D	F	L	P	K	V	K
Secondary structure
SS confidence
Disorder		?	?																																				?	?	?	?	?	?	?	?	?	?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Sequence		I	E	I	V	V	P	D	D	I	V	D	T	C	V	D	T	I	I	R	T	A	Q	T	G	K	I	G	D	G	K	I	F	V	F	D	V	A	R	V	I	R	I	R	T	G	E	E	D	D	A	A	I
Secondary structure
SS confidence
Disorder																											?																					?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pii chain A Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 2ns1 chain B domain 1 Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 67% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 3mhy chain C Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 64% PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure Phyre2 PDB 1qy7 chain A Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 66% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 1vfj chain A Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 45% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 2rd5 chain D Region: 1 - 112 Aligned: 112 Modelled: 112 Confidence: 100.0% Identity: 49% PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana Phyre2 PDB 3ncp chain D Region: 1 - 112 Aligned: 99 Modelled: 112 Confidence: 100.0% Identity: 56% PDB header:signaling protein Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2); PDBTitle: glnk2 from archaeoglobus fulgidus Phyre2 PDB 1hwu chain A Region: 1 - 112 Aligned: 99 Modelled: 112 Confidence: 100.0% Identity: 71% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 1ul3 chain A Region: 1 - 112 Aligned: 95 Modelled: 95 Confidence: 100.0% Identity: 63% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 3bzq chain A Region: 1 - 112 Aligned: 97 Modelled: 97 Confidence: 100.0% Identity: 58% PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis Phyre2 PDB 2j9d chain G Region: 1 - 112 Aligned: 99 Modelled: 112 Confidence: 100.0% Identity: 57% PDB header:membrane transport Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake Phyre2 PDB 3o8w chain A Region: 1 - 111 Aligned: 103 Modelled: 111 Confidence: 100.0% Identity: 56% PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 Phyre2 PDB 3l7p chain A Region: 1 - 102 Aligned: 82 Modelled: 86 Confidence: 99.9% Identity: 55% PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans Phyre2 PDB 2cz4 chain A domain 1 Region: 1 - 107 Aligned: 93 Modelled: 107 Confidence: 99.8% Identity: 17% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 3ce8 chain A Region: 2 - 102 Aligned: 84 Modelled: 95 Confidence: 98.6% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:putative pii-like nitrogen regulatory protein; PDBTitle: crystal structure of a duf3240 family protein (sbal_0098) from2 shewanella baltica os155 at 2.40 a resolution Phyre2 PDB 3m05 chain A Region: 2 - 101 Aligned: 83 Modelled: 83 Confidence: 98.2% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pepe_1480; PDBTitle: the crystal structure of a functionally unknown protein2 pepe_1480 from pediococcus pentosaceus atcc 25745 Phyre2 PDB 1o51 chain A Region: 2 - 97 Aligned: 75 Modelled: 80 Confidence: 96.7% Identity: 27% Fold: Ferredoxin-like Superfamily: GlnB-like Family: DUF190/COG1993 Phyre2 PDB 2dcl chain B Region: 13 - 97 Aligned: 66 Modelled: 71 Confidence: 95.3% Identity: 30% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 Phyre2 PDB 2gx8 chain B Region: 2 - 95 Aligned: 85 Modelled: 94 Confidence: 90.8% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 Phyre2 PDB 2gx8 chain A domain 1 Region: 2 - 95 Aligned: 85 Modelled: 94 Confidence: 88.5% Identity: 20% Fold: NIF3 (NGG1p interacting factor 3)-like Superfamily: NIF3 (NGG1p interacting factor 3)-like Family: NIF3 (NGG1p interacting factor 3)-like Phyre2 1 d2piia_ 2 d2ns1b1 3 c3mhyC_ 4 d1qy7a_ 5 d1vfja_ 6 c2rd5D_ 7 c3ncpD_ 8 d1hwua_ 9 d1ul3a_ 10 c3bzqA_ 11 c2j9dG_ 12 c3o8wA_ 13 c3l7pA_ 14 d2cz4a1 15 c3ce8A_ 16 c3m05A_ 17 d1o51a_ 18 c2dclB_ 19 c2gx8B_ 20 d2gx8a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2piia_ 100.0 100 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 2 d2ns1b1 100.0 67 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 3 c3mhyC_ 100.0 64 PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure 4 d1qy7a_ 100.0 66 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 5 d1vfja_ 100.0 45 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 6 c2rd5D_ 100.0 49 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 7 c3ncpD_ 100.0 56 PDB header:signaling protein Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2); PDBTitle: glnk2 from archaeoglobus fulgidus 8 d1hwua_ 100.0 71 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 9 d1ul3a_ 100.0 63 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 10 c3bzqA_ 100.0 58 PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis 11 c2j9dG_ 100.0 57 PDB header:membrane transport Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake 12 c3o8wA_ 100.0 56 PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 13 c3l7pA_ 99.9 55 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 14 d2cz4a1 99.8 17 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 15 c3ce8A_ 98.6 17 PDB header:unknown function Chain: A: PDB Molecule:putative pii-like nitrogen regulatory protein; PDBTitle: crystal structure of a duf3240 family protein (sbal_0098) from2 shewanella baltica os155 at 2.40 a resolution 16 c3m05A_ 98.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pepe_1480; PDBTitle: the crystal structure of a functionally unknown protein2 pepe_1480 from pediococcus pentosaceus atcc 25745 17 d1o51a_ 96.7 27 Fold:Ferredoxin-like Superfamily:GlnB-like Family:DUF190/COG1993 18 c2dclB_ 95.3 30 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical upf0166 protein ph1503; PDBTitle: structure of ph1503 protein from pyrococcus horikoshii ot3 19 c2gx8B_ 90.8 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 20 d2gx8a1 88.5 20 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 21 c3dfeA_ not modelled 86.6 26 PDB header:signaling protein Chain: A: PDB Molecule:putative pii-like signaling protein; PDBTitle: crystal structure of a putative pii-like signaling protein2 (yp_323533.1) from anabaena variabilis atcc 29413 at 2.35 a3 resolution 22 c3hluA_ not modelled 84.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 23 d1nh8a2 not modelled 84.3 16 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 24 c2nydB_ not modelled 81.3 20 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 25 c2vd3B_ not modelled 74.5 16 PDB header:transferase Chain: B: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum 26 c1nh7A_ not modelled 71.1 15 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: atp phosphoribosyltransferase (atp-prtase) from mycobacterium2 tuberculosis 27 d1h3da2 not modelled 57.0 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 28 c2cz9A_ not modelled 56.9 21 PDB header:transferase Chain: A: PDB Molecule:probable galactokinase; PDBTitle: crystal structure of galactokinase from pyrococcus horikoshi 29 c3rrkA_ not modelled 53.8 16 PDB header:proton transport Chain: A: PDB Molecule:v-type atpase 116 kda subunit; PDBTitle: crystal structure of the cytoplasmic n-terminal domain of subunit i,2 homolog of subunit a, of v-atpase 30 c2dtjA_ not modelled 53.7 13 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 31 c1q1kA_ not modelled 40.6 13 PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: structure of atp-phosphoribosyltransferase from e. coli complexed with2 pr-atp 32 c2hk3A_ not modelled 29.5 16 PDB header:lyase Chain: A: PDB Molecule:diphosphomevalonate decarboxylase; PDBTitle: crystal structure of mevalonate diphosphate decarboxylase2 from staphylococcus aureus (orthorhombic form) 33 c2f06B_ not modelled 24.7 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 34 d1zhva2 not modelled 23.2 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 35 c2zvyB_ not modelled 22.6 11 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 36 c2re1A_ not modelled 21.0 10 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 37 c2zhoB_ not modelled 20.6 15 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 38 d2hmfa2 not modelled 19.7 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 39 d1v6za2 not modelled 17.3 30 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 40 c2nuxB_ not modelled 17.0 20 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 41 c3hulA_ not modelled 16.9 21 PDB header:transferase Chain: A: PDB Molecule:homoserine kinase; PDBTitle: structure of putative homoserine kinase thrb from listeria2 monocytogenes 42 d1w1oa1 not modelled 16.9 13 Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Cytokinin dehydrogenase 1 43 d2f06a2 not modelled 15.2 28 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 44 c3dz1A_ not modelled 14.7 17 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution 45 c3fluD_ not modelled 14.7 16 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis 46 d2a5la1 not modelled 13.0 17 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 47 c3lerA_ not modelled 12.2 19 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 48 c3n2xB_ not modelled 12.1 17 PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate 49 d2j0wa3 not modelled 11.9 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 50 c2a2cA_ not modelled 11.7 18 PDB header:transferase Chain: A: PDB Molecule:n-acetylgalactosamine kinase; PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate 51 d1vi2a2 not modelled 11.3 17 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 52 d1nxza2 not modelled 10.7 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 53 c3pueA_ not modelled 10.6 12 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 54 c2yxgD_ not modelled 10.6 16 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 55 c3b4uB_ not modelled 10.3 13 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 56 c1zr6A_ not modelled 10.2 27 PDB header:oxidoreductase Chain: A: PDB Molecule:glucooligosaccharide oxidase; PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation 57 c1z85B_ not modelled 10.0 14 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 58 c2gs8A_ not modelled 9.9 10 PDB header:lyase Chain: A: PDB Molecule:mevalonate pyrophosphate decarboxylase; PDBTitle: structure of mevalonate pyrophosphate decarboxylase from streptococcus2 pyogenes 59 d1mwza_ not modelled 9.8 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 60 c3mahA_ not modelled 9.7 19 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 61 c3lciA_ not modelled 9.7 16 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 62 d1nvta2 not modelled 9.7 33 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 63 c3cprB_ not modelled 9.5 17 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 64 d1x8da1 not modelled 9.4 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 65 c2zodB_ not modelled 9.4 17 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 66 d1vhka2 not modelled 9.3 17 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 67 d1p77a2 not modelled 9.1 21 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 68 c3nnqA_ not modelled 9.1 16 PDB header:viral protein Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3 69 c2qlxA_ not modelled 9.0 11 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 70 c2qlwA_ not modelled 9.0 11 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 71 d1xxxa1 not modelled 9.0 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 72 c2cx8B_ not modelled 8.8 30 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 73 d1fx0a2 not modelled 8.8 21 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 74 c3mdoB_ not modelled 8.8 23 PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution 75 d2cdqa3 not modelled 8.8 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 76 c3daqB_ not modelled 8.7 12 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus 77 c2zkru_ not modelled 8.6 25 PDB header:ribosomal protein/rna Chain: U: PDB Molecule:rna expansion segment es41; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 78 d1vqou1 not modelled 8.2 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Ribosomal protein L24e 79 c3ccjU_ not modelled 8.2 50 PDB header:ribosome Chain: U: PDB Molecule:50s ribosomal protein l24e; PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u 80 d2i0ka2 not modelled 8.2 12 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:FAD-linked oxidases, N-terminal domain 81 c3l76B_ not modelled 8.2 13 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 82 d1nyta2 not modelled 8.1 21 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 83 d1oyia_ not modelled 7.9 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 84 c1oyiA_ not modelled 7.9 35 PDB header:viral protein Chain: A: PDB Molecule:double-stranded rna-binding protein; PDBTitle: solution structure of the z-dna binding domain of the2 vaccinia virus gene e3l 85 c2l26A_ not modelled 7.7 20 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 86 c2y3rC_ not modelled 7.7 18 PDB header:oxidoreductase Chain: C: PDB Molecule:taml; PDBTitle: structure of the tirandamycin-bound fad-dependent2 tirandamycin oxidase taml in p21 space group 87 c3n3fB_ not modelled 7.4 29 PDB header:protein binding Chain: B: PDB Molecule:collagen alpha-1(xv) chain; PDBTitle: crystal structure of the human collagen xv trimerization domain: a2 potent trimerizing unit common to multiplexin collagens 88 c3izcZ_ not modelled 7.3 50 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 89 c4a1eT_ not modelled 7.2 38 PDB header:ribosome Chain: T: PDB Molecule:rpl24; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 90 c3oonA_ not modelled 7.2 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 91 d1v7ra_ not modelled 7.1 32 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:ITPase (Ham1) 92 d1hl2a_ not modelled 7.1 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 93 c2qieA_ not modelled 7.0 19 PDB header:transferase Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 94 c2ipiD_ not modelled 6.9 12 PDB header:oxidoreductase Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox); PDBTitle: crystal structure of aclacinomycin oxidoreductase 95 d1o5ka_ not modelled 6.9 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 96 c1vhkA_ not modelled 6.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 97 d1j3ma_ not modelled 6.9 20 Fold:TBP-like Superfamily:TT1751-like Family:TT1751-like 98 d1ny5a2 not modelled 6.8 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 99 d1t3ta6 not modelled 6.8 7 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0