Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	V	I	K	K	K	H	W	W	Q	S	D	A	L	K	W	S	V	L	G	L	L	G	L	L	V	G	Y	L	V	V	L	M	Y	A	Q	G	E	Y	L	F	A	I	T	T	L	I	L	S	S	A	G	L	Y	I	F	A	N	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	A	Y	A	W	R	Y	V	Y	P	G	M	A	G	M	G	L	F	V	L	F	P	L	V	C	T	I	A	I	A	F	T	N	Y	S	S	T	N	Q	L	T	F	E	R	A	Q	E	V	L	L	D	R	S	W	Q	A	G	K	T	Y
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?										?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	F	G	L	Y	P	A	G	D	E	W	Q	L	A	L	S	D	G	E	T	G	K	N	Y	L	S	D	A	F	K	F	G	G	E	Q	K	L	Q	L	K	E	T	T	A	Q	P	E	G	E	R	A	N	L	R	V	I	T	Q	N	R
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	A	L	S	D	I	T	A	I	L	P	D	G	N	K	V	M	M	S	S	L	R	Q	F	S	G	T	Q	P	L	Y	T	L	D	G	D	G	T	L	T	N	N	Q	S	G	V	K	Y	R	P	N	N	Q	I	G	F	Y	Q	S	I
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?				?	?	?		?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	A	D	G	N	W	G	D	E	K	L	S	P	G	Y	T	V	T	T	G	W	K	N	F	T	R	V	F	T	D	E	G	I	Q	K	P	F	L	A	I	F	V	W	T	V	V	F	S	L	I	T	V	F	L	T	V	A	V	G	M
Secondary structure
SS confidence
Disorder				?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	L	A	C	L	V	Q	W	E	A	L	R	G	K	A	V	Y	R	V	L	L	I	L	P	Y	A	V	P	S	F	I	S	I	L	I	F	K	G	L	F	N	Q	S	F	G	E	I	N	M	M	L	S	A	L	F	G	V	K	P	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		W	F	S	D	P	T	T	A	R	T	M	L	I	I	V	N	T	W	L	G	Y	P	Y	M	M	I	L	C	M	G	L	L	K	A	I	P	D	D	L	Y	E	A	S	A	M	D	G	A	G	P	F	Q	N	F	F	K	I	T	L	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	L	I	K	P	L	T	P	L	M	I	A	S	F	A	F	N	F	N	N	F	V	L	I	Q	L	L	T	N	G	G	P	D	R	L	G	T	T	T	P	A	G	Y	T	D	L	L	V	N	Y	T	Y	R	I	A	F	E	G	G	G
Secondary structure
SS confidence
Disorder																																			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Sequence		G	Q	D	F	G	L	A	A	A	I	A	T	L	I	F	L	L	V	G	A	L	A	I	V	N	L	K	A	T	R	M	K	F	D
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2r6g chain F Region: 13 - 504 Aligned: 490 Modelled: 492 Confidence: 100.0% Identity: 100% PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter Phyre2 PDB 3fh6 chain F Region: 215 - 514 Aligned: 300 Modelled: 300 Confidence: 100.0% Identity: 85% PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli Phyre2 PDB 2r6g chain F domain 2 Region: 261 - 504 Aligned: 244 Modelled: 244 Confidence: 100.0% Identity: 100% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2onk chain C Region: 219 - 507 Aligned: 249 Modelled: 265 Confidence: 100.0% Identity: 16% PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda Phyre2 PDB 2onk chain C domain 1 Region: 219 - 507 Aligned: 249 Modelled: 265 Confidence: 100.0% Identity: 16% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3d31 chain D Region: 230 - 506 Aligned: 247 Modelled: 255 Confidence: 100.0% Identity: 15% PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans Phyre2 PDB 3d31 chain C domain 1 Region: 230 - 506 Aligned: 247 Modelled: 255 Confidence: 100.0% Identity: 15% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2r6g chain G domain 1 Region: 215 - 508 Aligned: 266 Modelled: 279 Confidence: 100.0% Identity: 18% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 3dhw chain A domain 1 Region: 277 - 504 Aligned: 198 Modelled: 213 Confidence: 99.8% Identity: 18% Fold: MetI-like Superfamily: MetI-like Family: MetI-like Phyre2 PDB 2r6g chain F domain 1 Region: 13 - 260 Aligned: 246 Modelled: 248 Confidence: 99.6% Identity: 100% Fold: MalF N-terminal region-like Superfamily: MalF N-terminal region-like Family: MalF N-terminal region-like Phyre2 PDB 1ntc chain A Region: 386 - 418 Aligned: 33 Modelled: 33 Confidence: 53.1% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1umq chain A Region: 387 - 417 Aligned: 31 Modelled: 31 Confidence: 50.2% Identity: 3% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1umq chain A Region: 387 - 417 Aligned: 31 Modelled: 31 Confidence: 50.2% Identity: 3% PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity Phyre2 PDB 1fip chain A Region: 387 - 418 Aligned: 32 Modelled: 32 Confidence: 42.4% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1eto chain B Region: 387 - 418 Aligned: 32 Modelled: 32 Confidence: 37.8% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 1etx chain A Region: 387 - 418 Aligned: 32 Modelled: 32 Confidence: 34.3% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 PDB 3e7l chain D Region: 386 - 418 Aligned: 33 Modelled: 33 Confidence: 30.8% Identity: 21% PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain Phyre2 PDB 2hx6 chain A Region: 386 - 411 Aligned: 26 Modelled: 26 Confidence: 29.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb Phyre2 PDB 2auw chain A domain 1 Region: 91 - 113 Aligned: 23 Modelled: 23 Confidence: 24.8% Identity: 26% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: NE0471 C-terminal domain-like Phyre2 PDB 1g2h chain A Region: 387 - 417 Aligned: 30 Modelled: 31 Confidence: 23.9% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: FIS-like Phyre2 1 c2r6gF_ 2 c3fh6F_ 3 d2r6gf2 4 c2onkC_ 5 d2onkc1 6 c3d31D_ 7 d3d31c1 8 d2r6gg1 9 d3dhwa1 10 d2r6gf1 11 d1ntca_ 12 d1umqa_ 13 c1umqA_ 14 d1fipa_ 15 d1etob_ 16 d1etxa_ 17 c3e7lD_ 18 c2hx6A_ 19 d2auwa1 20 d1g2ha_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2r6gF_ 100.0 100 PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter 2 c3fh6F_ 100.0 85 PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli 3 d2r6gf2 100.0 100 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 4 c2onkC_ 100.0 16 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 5 d2onkc1 100.0 16 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 6 c3d31D_ 100.0 15 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 7 d3d31c1 100.0 15 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 8 d2r6gg1 100.0 18 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 9 d3dhwa1 99.8 18 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 10 d2r6gf1 99.6 100 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 11 d1ntca_ 53.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 12 d1umqa_ 50.2 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 13 c1umqA_ 50.2 3 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 14 d1fipa_ 42.4 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 15 d1etob_ 37.8 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 16 d1etxa_ 34.3 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 17 c3e7lD_ 30.8 21 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 18 c2hx6A_ 29.0 23 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 19 d2auwa1 24.8 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 20 d1g2ha_ 23.9 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 21 c2jwaA_ not modelled 15.3 15 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 22 c2auwB_ not modelled 13.8 26 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 23 d1cf7a_ not modelled 11.7 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 24 c2cw1A_ not modelled 11.5 14 PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein 25 d1wdva_ not modelled 11.4 22 Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain 26 c1pyuD_ not modelled 11.3 31 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 27 d1v54g_ not modelled 11.3 18 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 28 c1iijA_ not modelled 10.9 26 PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment 29 c2d7dB_ not modelled 10.0 12 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 30 d1vz0a1 not modelled 10.0 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 31 d2diia1 not modelled 9.7 22 Fold:BSD domain-like Superfamily:BSD domain-like Family:BSD domain 32 d2jdih2 not modelled 9.4 11 Fold:Epsilon subunit of F1F0-ATP synthase N-terminal domain Superfamily:Epsilon subunit of F1F0-ATP synthase N-terminal domain Family:Epsilon subunit of F1F0-ATP synthase N-terminal domain 33 c2diiA_ not modelled 9.0 22 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 34 c1ql1A_ not modelled 8.8 19 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 35 c2cx5B_ not modelled 8.7 22 PDB header:translation Chain: B: PDB Molecule:a putative trans-editing enzyme; PDBTitle: crystal structure of a putative trans-editing enzyme for2 prolyl trna synthetase 36 c1vc3B_ not modelled 8.6 23 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 37 d2ns0a1 not modelled 8.3 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 38 c3hd7A_ not modelled 8.2 17 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 39 c3plxB_ not modelled 8.1 31 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 40 c2l2tA_ not modelled 8.0 26 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 41 c2voyG_ not modelled 7.8 18 PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 42 d3fapb_ not modelled 7.5 32 Fold:Four-helical up-and-down bundle Superfamily:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Family:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 43 c1twcF_ not modelled 7.4 29 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23 PDBTitle: rna polymerase ii complexed with gtp 44 d1twff_ not modelled 7.4 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 45 d1ppya_ not modelled 7.2 31 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 46 c2pmzW_ not modelled 7.2 29 PDB header:translation, transferase Chain: W: PDB Molecule:dna-directed rna polymerase subunit k; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 47 c1pt1B_ not modelled 7.2 31 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 48 d1st6a6 not modelled 7.1 7 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 49 d1bl0a1 not modelled 7.1 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 50 c1uheA_ not modelled 7.0 23 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 51 c2k53A_ not modelled 6.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:a3dk08 protein; PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9 52 d2axtz1 not modelled 6.9 15 Fold:Transmembrane helix hairpin Superfamily:PsbZ-like Family:PsbZ-like 53 c2k5eA_ not modelled 6.6 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 54 d1jjcb2 not modelled 6.5 9 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 55 d1qkla_ not modelled 6.4 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 56 d1ku7a_ not modelled 6.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 57 d1clia1 not modelled 6.3 9 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 58 d1clib1 not modelled 6.3 8 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 59 d1i3ja_ not modelled 6.2 9 Fold:DNA-binding domain of intron-encoded endonucleases Superfamily:DNA-binding domain of intron-encoded endonucleases Family:DNA-binding domain of intron-encoded endonucleases 60 c2i5gB_ not modelled 6.2 7 PDB header:hydrolase Chain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal strcuture of amidohydrolase from pseudomonas2 aeruginosa 61 c2c45F_ not modelled 6.1 31 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 62 c3t72o_ not modelled 6.1 11 PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex 63 c1r71B_ not modelled 6.0 5 PDB header:transcription/dna Chain: B: PDB Molecule:transcriptional repressor protein korb; PDBTitle: crystal structure of the dna binding domain of korb in2 complex with the operator dna 64 c2g9jA_ not modelled 6.0 86 PDB header:structural protein Chain: A: PDB Molecule:tropomyosin 1 alpha chain/general control protein PDBTitle: complex of tm1a(1-14)zip with tm9a(251-284): a model for the2 polymerization domain ("overlap region") of tropomyosin,3 northeast structural genomics target or9 65 c1l0oC_ not modelled 6.0 12 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 66 d1l0oc_ not modelled 6.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 67 c3mkuA_ not modelled 6.0 11 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 68 d1coka_ not modelled 5.9 26 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 69 d1jhfa1 not modelled 5.9 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 70 c3qkbB_ not modelled 5.9 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution 71 c3h0gF_ not modelled 5.9 29 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 72 d1h6gb1 not modelled 5.8 13 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 73 c3ougA_ not modelled 5.8 8 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis 74 c2kfsA_ not modelled 5.8 15 PDB header:dna-binding protein Chain: A: PDB Molecule:conserved hypothetical regulatory protein; PDBTitle: nmr structure of rv2175c 75 d1vr4a1 not modelled 5.7 31 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 76 c3op6B_ not modelled 5.7 17 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an oligo-nucleotide binding protein (lpg1207)2 from legionella pneumophila subsp. pneumophila str. philadelphia 1 at3 2.00 a resolution 77 d1brwa3 not modelled 5.7 38 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 78 c2latA_ not modelled 5.7 21 PDB header:membrane protein Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein PDBTitle: solution structure of a human minimembrane protein ost4 79 d3c9ua1 not modelled 5.6 5 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 80 c2ka6B_ not modelled 5.6 31 PDB header:transcription regulator Chain: B: PDB Molecule:signal transducer and activator of transcription PDBTitle: nmr structure of the cbp-taz2/stat1-tad complex 81 d2oz6a1 not modelled 5.5 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 82 c1sneA_ not modelled 5.5 31 PDB header:de novo protein Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 83 c1sneB_ not modelled 5.5 31 PDB header:de novo protein Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 84 d1p77a2 not modelled 5.4 11 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Shikimate dehydrogenase-like 85 d2tpta3 not modelled 5.4 31 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 86 d2hqva1 not modelled 5.3 17 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:ChuX-like 87 c3rkoF_ not modelled 5.3 18 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 88 d2phcb1 not modelled 5.3 9 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 89 c1y2iC_ not modelled 5.3 23 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein s0862; PDBTitle: crystal structure of mcsg target apc27401 from shigella2 flexneri 90 d1y2ia_ not modelled 5.3 23 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 91 c1y6uA_ not modelled 5.3 25 PDB header:dna binding protein Chain: A: PDB Molecule:excisionase from transposon tn916; PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases 92 d1i5za1 not modelled 5.3 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 93 c2ph0A_ not modelled 5.3 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia2 carotovora. nesg target ewr41. 94 c2oviA_ not modelled 5.3 6 PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux 95 d1ku2a1 not modelled 5.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 96 c1rkcB_ not modelled 5.1 25 PDB header:cell adhesion, structural protein Chain: B: PDB Molecule:talin; PDBTitle: human vinculin head (1-258) in complex with talin's2 vinculin binding site 3 (residues 1944-1969) 97 c2r2vB_ not modelled 5.1 38 PDB header:de novo protein Chain: B: PDB Molecule:gcn4 leucine zipper; PDBTitle: sequence determinants of the topology of the lac repressor2 tetrameric coiled coil 98 d1i1ga1 not modelled 5.0 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 99 c1jb0X_ not modelled 5.0 33 PDB header:photosynthesis Chain: X: PDB Molecule:photosystem i subunit psax; PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0