Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	K	I	L	L	L	A	L	L	P	A	I	A	F	A	E	E	L	P	A	P	V	K	A	I	E	K	Q	G	I	T	I	I	K	T	F	D	A	P	G	G	M	K	G	Y	L	G	K	Y	Q	D	M	G	V	T	I	Y	L
Secondary structure
SS confidence
Disorder		?														?	?	?	?	?	?	?	?							?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	P	D	G	K	H	A	I	S	G	Y	M	Y	N	E	K	G	E	N	L	S	N	T	L	I	E	K	E	I	Y	A	P	A	G	R	E	M	W	Q	R	M	E	Q	S	H	W	L	L	D	G	K	K	D	A	P	V	I	V	Y	V
Secondary structure
SS confidence
Disorder																					?	?							?	?	?	?	?	?	?						?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	A	D	P	F	C	P	Y	C	K	Q	F	W	Q	Q	A	R	P	W	V	D	S	G	K	V	Q	L	R	T	L	L	V	G	V	I	K	P	E	S	P	A	T	A	A	A	I	L	A	S	K	D	P	A	K	T	W	Q	Q	Y	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	S	G	G	K	L	K	L	N	V	P	A	N	V	S	T	E	Q	M	K	V	L	S	D	N	E	K	L	M	D	D	L	G	A	N	V	T	P	A	I	Y	Y	M	S	K	E	N	T	L	Q	Q	A	V	G	L	P	D	Q	K	T
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		L	N	I	I	M	G	N	K
Secondary structure
SS confidence
Disorder						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1v57 chain A Region: 19 - 247 Aligned: 229 Modelled: 229 Confidence: 100.0% Identity: 100% PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg Phyre2 PDB 1jzd chain A Region: 15 - 245 Aligned: 207 Modelled: 224 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex Phyre2 PDB 1t3b chain A Region: 21 - 245 Aligned: 201 Modelled: 217 Confidence: 100.0% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae Phyre2 PDB 1v58 chain A domain 1 Region: 79 - 247 Aligned: 169 Modelled: 169 Confidence: 100.0% Identity: 100% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbC/DsbG C-terminal domain-like Phyre2 PDB 1t3b chain A domain 1 Region: 95 - 245 Aligned: 139 Modelled: 151 Confidence: 100.0% Identity: 19% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbC/DsbG C-terminal domain-like Phyre2 PDB 1eej chain A domain 1 Region: 79 - 245 Aligned: 144 Modelled: 167 Confidence: 100.0% Identity: 20% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbC/DsbG C-terminal domain-like Phyre2 PDB 3gv1 chain A Region: 101 - 246 Aligned: 135 Modelled: 145 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae Phyre2 PDB 3gyk chain C Region: 101 - 245 Aligned: 140 Modelled: 145 Confidence: 99.9% Identity: 23% PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 Phyre2 PDB 1z6m chain A domain 1 Region: 99 - 246 Aligned: 143 Modelled: 148 Confidence: 99.9% Identity: 15% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 3f4t chain A Region: 101 - 245 Aligned: 143 Modelled: 145 Confidence: 99.9% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a Phyre2 PDB 3gha chain A Region: 102 - 245 Aligned: 139 Modelled: 144 Confidence: 99.8% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) Phyre2 PDB 2rem chain B Region: 101 - 245 Aligned: 139 Modelled: 145 Confidence: 99.8% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa Phyre2 PDB 3gn3 chain B Region: 109 - 246 Aligned: 133 Modelled: 138 Confidence: 99.8% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. Phyre2 PDB 3h93 chain A Region: 108 - 246 Aligned: 137 Modelled: 139 Confidence: 99.8% Identity: 12% PDB header:transcription regulator Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of pseudomonas aeruginosa dsba Phyre2 PDB 3dvw chain A Region: 110 - 245 Aligned: 131 Modelled: 136 Confidence: 99.8% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis Phyre2 PDB 3hd5 chain A Region: 110 - 245 Aligned: 131 Modelled: 136 Confidence: 99.8% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis Phyre2 PDB 3bci chain A Region: 114 - 245 Aligned: 127 Modelled: 132 Confidence: 99.8% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba Phyre2 PDB 2znm chain A Region: 110 - 245 Aligned: 132 Modelled: 136 Confidence: 99.8% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis Phyre2 PDB 1bed chain A Region: 102 - 245 Aligned: 140 Modelled: 144 Confidence: 99.8% Identity: 14% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 3gmf chain A Region: 104 - 245 Aligned: 136 Modelled: 142 Confidence: 99.7% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans Phyre2 1 c1v57A_ 2 c1jzdA_ 3 c1t3bA_ 4 d1v58a1 5 d1t3ba1 6 d1eeja1 7 c3gv1A_ 8 c3gykC_ 9 d1z6ma1 10 c3f4tA_ 11 c3ghaA_ 12 c2remB_ 13 c3gn3B_ 14 c3h93A_ 15 c3dvwA_ 16 c3hd5A_ 17 c3bciA_ 18 c2znmA_ 19 d1beda_ 20 c3gmfA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1v57A_ 100.0 100 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 2 c1jzdA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 3 c1t3bA_ 100.0 20 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 4 d1v58a1 100.0 100 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 5 d1t3ba1 100.0 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 6 d1eeja1 100.0 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 7 c3gv1A_ 100.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 8 c3gykC_ 99.9 23 PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 9 d1z6ma1 99.9 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 10 c3f4tA_ 99.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a 11 c3ghaA_ 99.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) 12 c2remB_ 99.8 18 PDB header:oxidoreductase Chain: B: PDB Molecule:disulfide oxidoreductase; PDBTitle: crystal structure of oxidoreductase dsba from xylella2 fastidiosa 13 c3gn3B_ 99.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. 14 c3h93A_ 99.8 12 PDB header:transcription regulator Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of pseudomonas aeruginosa dsba 15 c3dvwA_ 99.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis 16 c3hd5A_ 99.8 11 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis 17 c3bciA_ 99.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 18 c2znmA_ 99.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis 19 d1beda_ 99.8 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 20 c3gmfA_ 99.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans 21 c3feuA_ not modelled 99.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri 22 c3l9vE_ not modelled 99.7 20 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 23 d1fvka_ not modelled 99.7 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 24 c3c7mB_ not modelled 99.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 25 c2in3A_ not modelled 99.6 18 PDB header:isomerase Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea 26 c3kzqE_ not modelled 99.6 19 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 27 c3gl5A_ not modelled 99.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dsba oxidoreductase sco1869; PDBTitle: crystal structure of probable dsba oxidoreductase sco1869 from2 streptomyces coelicolor 28 c3fz5C_ not modelled 99.5 11 PDB header:isomerase Chain: C: PDB Molecule:possible 2-hydroxychromene-2-carboxylate isomerase; PDBTitle: crystal structure of possible 2-hydroxychromene-2-carboxylate2 isomerase from rhodobacter sphaeroides 29 d1v58a2 not modelled 99.5 100 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 30 d1r4wa_ not modelled 99.4 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 31 c2imeA_ not modelled 99.4 17 PDB header:transferase Chain: A: PDB Molecule:2-hydroxychromene-2-carboxylate isomerase; PDBTitle: 2-hydroxychromene-2-carboxylate isomerase: a kappa class glutathione-2 s-transferase from pseudomonas putida 32 c1yzxB_ not modelled 99.4 17 PDB header:transferase Chain: B: PDB Molecule:glutathione s-transferase kappa 1; PDBTitle: crystal structure of human kappa class glutathione2 transferase 33 c2iyjA_ not modelled 99.0 37 PDB header:isomerase Chain: A: PDB Molecule:thiol disulfide interchange protein dsbc; PDBTitle: crystal structure of the n-terminal dimer domain of e.coli2 dsbc 34 d1j08a2 not modelled 98.9 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 35 d1zmaa1 not modelled 98.8 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 36 c2l57A_ not modelled 98.7 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens 37 d1a8la2 not modelled 98.7 24 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 38 d1eeja2 not modelled 98.7 36 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 39 d1j08a1 not modelled 98.6 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 40 c2l6dA_ not modelled 98.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form 41 c3emxB_ not modelled 98.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from aeropyrum pernix 42 d1a8la1 not modelled 98.6 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 43 c1zypB_ not modelled 98.5 14 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf 44 d1t3ba2 not modelled 98.5 21 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 45 d1hyua4 not modelled 98.5 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 46 c2hyxA_ not modelled 98.5 17 PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis 47 d1zzoa1 not modelled 98.5 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 48 d2fwha1 not modelled 98.5 26 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 49 d1dbya_ not modelled 98.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 50 d1nhoa_ not modelled 98.4 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 51 c3hypB_ not modelled 98.4 20 PDB header:electron transport Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant 52 c2l5lA_ not modelled 98.4 18 PDB header:transport protein Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution structure of thioredoxin from bacteroides vulgatus 53 c3ul3A_ not modelled 98.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: structural insights into thioredoxin-2: a component of malaria2 parasite protein secretion machinery 54 c3dmlA_ not modelled 98.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the periplasmic thioredoxin soxs from2 paracoccus pantotrophus (reduced form) 55 d2b5xa1 not modelled 98.3 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 56 d1un2a_ not modelled 98.3 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 57 d1i5ga_ not modelled 98.3 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 58 c2i4aA_ not modelled 98.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from the acidophile2 acetobacter aceti 59 c1v98A_ not modelled 98.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus 60 d1thxa_ not modelled 98.3 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 61 c3p2aB_ not modelled 98.2 24 PDB header:oxidoreductase Chain: B: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 62 c2pptA_ not modelled 98.2 20 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 63 c3kh7A_ not modelled 98.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 64 d1z5ye1 not modelled 98.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 65 c3hz4A_ not modelled 98.2 20 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of thioredoxin from methanosarcina mazei 66 c1t00A_ not modelled 98.2 13 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: the structure of thioredoxin from s. coelicolor 67 c3gnjD_ not modelled 98.2 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:thioredoxin domain protein; PDBTitle: the crystal structure of a thioredoxin-related protein from2 desulfitobacterium hafniense dcb 68 c2r2jA_ not modelled 98.2 15 PDB header:chaperone Chain: A: PDB Molecule:thioredoxin domain-containing protein 4; PDBTitle: crystal structure of human erp44 69 c2ju5A_ not modelled 98.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 70 c3erwG_ not modelled 98.2 18 PDB header:oxidoreductase Chain: G: PDB Molecule:sporulation thiol-disulfide oxidoreductase a; PDBTitle: crystal structure of stoa from bacillus subtilis 71 d1knga_ not modelled 98.2 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 72 c3dxbE_ not modelled 98.2 20 PDB header:splicing, transcription Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm); PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin 73 c2kucA_ not modelled 98.2 20 PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron 74 c3p2aA_ not modelled 98.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin-like protein; PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis 75 c2yzuA_ not modelled 98.1 17 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of oxidized thioredoxin from thermus thermophilus2 hb8 76 d2cvba1 not modelled 98.1 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 77 c1w89E_ not modelled 98.1 18 PDB header:electron transport Chain: E: PDB Molecule:thioredoxin; PDBTitle: structure of the reduced form of human thioredoxin 2 78 c2i1uA_ not modelled 98.1 13 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: mycobacterium tuberculosis thioredoxin c 79 c2ywiA_ not modelled 98.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus 80 d1st9a_ not modelled 98.1 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 81 c3ia1A_ not modelled 98.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus 82 c2e0qA_ not modelled 98.1 14 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7 83 d2fy6a1 not modelled 98.1 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 84 d1syra_ not modelled 98.1 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 85 c3ha9A_ not modelled 98.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized thioredoxin-like protein; PDBTitle: the 1.7a crystal structure of a thioredoxin-like protein from2 aeropyrum pernix 86 c2b1kA_ not modelled 98.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein 87 c2fgxA_ not modelled 98.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 88 d1o8xa_ not modelled 98.0 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 89 d1xwaa_ not modelled 98.0 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 90 d1lu4a_ not modelled 98.0 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 91 c2o7kA_ not modelled 98.0 14 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: s. aureus thioredoxin 92 c3qdnA_ not modelled 98.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium 93 c3or5A_ not modelled 98.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 94 c1x5dA_ not modelled 98.0 24 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the second thioredoxin-like2 domain of human protein disulfide-isomerase a6 95 c2diyA_ not modelled 98.0 23 PDB header:protein binding Chain: A: PDB Molecule:thioredoxin-like protein 2; PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2 96 c1j08A_ not modelled 98.0 22 PDB header:isomerase Chain: A: PDB Molecule:glutaredoxin-like protein; PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii 97 d1nw2a_ not modelled 98.0 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 98 d1fo5a_ not modelled 98.0 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 99 d1o73a_ not modelled 98.0 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 100 d2trxa_ not modelled 98.0 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 101 d1ep7a_ not modelled 97.9 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 102 c2vm2C_ not modelled 97.9 9 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin h isoform 1.; PDBTitle: crystal structure of barley thioredoxin h isoform 12 crystallized using peg as precipitant 103 c2vlvA_ not modelled 97.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin h isoform 2.; PDBTitle: crystal structure of barley thioredoxin h isoform 2 in2 partially radiation-reduced state 104 c3ewlA_ not modelled 97.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein bf1870; PDBTitle: crystal structure of conserved protein bf1870 of unknown function from2 bacteroides fragilis 105 d1f9ma_ not modelled 97.9 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 106 c3tcoA_ not modelled 97.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin (trxa-1); PDBTitle: crystallographic and spectroscopic characterization of sulfolobus2 solfataricus trxa1 provide insights into the determinants of3 thioredoxin fold stability 107 d1m7ta_ not modelled 97.9 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 108 d1ti3a_ not modelled 97.9 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 109 c2aytB_ not modelled 97.9 20 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin-like protein; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aquifex aeolicus 110 c2vocA_ not modelled 97.9 19 PDB header:electron transport Chain: A: PDB Molecule:thioredoxin; PDBTitle: thioredoxin a active site mutants form mixed disulfide2 dimers that resemble enzyme-substrate reaction3 intermediate 111 d1fb6a_ not modelled 97.9 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 112 c2hlsB_ not modelled 97.9 29 PDB header:oxidoreductase Chain: B: PDB Molecule:protein disulfide oxidoreductase; PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aeropyrum pernix k1 113 c3lorB_ not modelled 97.8 20 PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a 114 c3razA_ not modelled 97.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-related protein; PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b 115 c3apsA_ not modelled 97.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of trx4 domain of erdj5 116 c1xbsA_ not modelled 97.8 19 PDB header:transcription, cell cycle Chain: A: PDB Molecule:dim1-like protein; PDBTitle: crystal structure of human dim2: a dim1-like protein 117 c2vimA_ not modelled 97.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: x-ray structure of fasciola hepatica thioredoxin 118 c2xbqB_ not modelled 97.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin; PDBTitle: crystal structure of reduced schistosoma mansoni2 thioredoxin pre-protein at 1.7 angstrom 119 c3f8uA_ not modelled 97.8 16 PDB header:immune system/isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3erp57; PDBTitle: tapasin/erp57 heterodimer 120 c3cxgA_ not modelled 97.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: crystal structure of plasmodium falciparum thioredoxin, pfi0790w

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0