Secondary structure and disorder prediction

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Sequence		M	S	A	L	F	L	A	I	P	L	T	I	F	V	L	F	V	L	P	I	W	L	W	L	H	Y	S	N	R	S	G	R	S	E	L	S	Q	S	E	Q	Q	R	L	A	Q	L	A	D	E	A	K	R	M	R	E	R	I	Q	A	L
Secondary structure
SS confidence
Disorder		?	?	?	?																									?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.
Sequence		E	S	I	L	D	A	E	H	P	N	W	R	D	R
Secondary structure
SS confidence
Disorder						?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bzk chain A domain 3 Region: 23 - 68 Aligned: 45 Modelled: 46 Confidence: 52.2% Identity: 16% Fold: Tex N-terminal region-like Superfamily: Tex N-terminal region-like Family: Tex N-terminal region-like Phyre2 PDB 1aq5 chain C Region: 40 - 64 Aligned: 25 Modelled: 25 Confidence: 48.3% Identity: 24% PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures Phyre2 PDB 2xdj chain F Region: 53 - 68 Aligned: 16 Modelled: 16 Confidence: 40.9% Identity: 31% PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf Phyre2 PDB 1e52 chain A Region: 47 - 64 Aligned: 18 Modelled: 18 Confidence: 40.6% Identity: 22% Fold: Long alpha-hairpin Superfamily: C-terminal UvrC-binding domain of UvrB Family: C-terminal UvrC-binding domain of UvrB Phyre2 PDB 2oce chain A Region: 23 - 68 Aligned: 45 Modelled: 46 Confidence: 36.3% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa Phyre2 PDB 2pnv chain A Region: 40 - 65 Aligned: 26 Modelled: 26 Confidence: 32.1% Identity: 23% PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus Phyre2 PDB 1nkz chain B Region: 4 - 22 Aligned: 19 Modelled: 19 Confidence: 24.9% Identity: 37% Fold: Light-harvesting complex subunits Superfamily: Light-harvesting complex subunits Family: Light-harvesting complex subunits Phyre2 PDB 1jb0 chain I Region: 6 - 27 Aligned: 22 Modelled: 22 Confidence: 24.4% Identity: 18% Fold: Single transmembrane helix Superfamily: Subunit VIII of photosystem I reaction centre, PsaI Family: Subunit VIII of photosystem I reaction centre, PsaI Phyre2 PDB 2oqq chain B Region: 40 - 60 Aligned: 21 Modelled: 21 Confidence: 23.1% Identity: 24% PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana Phyre2 PDB 3okq chain A Region: 41 - 72 Aligned: 32 Modelled: 32 Confidence: 23.0% Identity: 19% PDB header:protein binding Chain: A: PDB Molecule:bud site selection protein 6; PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6 Phyre2 PDB 1wrd chain A domain 1 Region: 31 - 60 Aligned: 30 Modelled: 30 Confidence: 22.6% Identity: 17% Fold: Spectrin repeat-like Superfamily: GAT-like domain Family: GAT domain Phyre2 PDB 1b9u chain A Region: 6 - 27 Aligned: 19 Modelled: 22 Confidence: 20.8% Identity: 32% PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase Phyre2 PDB 1pft chain A Region: 61 - 73 Aligned: 12 Modelled: 13 Confidence: 20.7% Identity: 50% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 3mk7 chain F Region: 1 - 33 Aligned: 33 Modelled: 33 Confidence: 20.2% Identity: 21% PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase Phyre2 PDB 3ixz chain B Region: 57 - 74 Aligned: 18 Modelled: 18 Confidence: 20.2% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride Phyre2 PDB 1dl6 chain A Region: 61 - 73 Aligned: 12 Modelled: 13 Confidence: 20.1% Identity: 25% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1wr6 chain A domain 1 Region: 31 - 60 Aligned: 30 Modelled: 30 Confidence: 19.4% Identity: 17% Fold: Spectrin repeat-like Superfamily: GAT-like domain Family: GAT domain Phyre2 PDB 3bz1 chain Y Region: 1 - 17 Aligned: 17 Modelled: 17 Confidence: 18.8% Identity: 47% PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii protein y; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer Phyre2 PDB 2d96 chain A Region: 54 - 72 Aligned: 19 Modelled: 19 Confidence: 18.6% Identity: 32% PDB header:transcription Chain: A: PDB Molecule:nuclear factor nf-kappa-b p100 subunit; PDBTitle: solution structure of the death domain of nuclear factor nf-2 kappa-b p100 Phyre2 PDB 3arc chain Y Region: 1 - 17 Aligned: 17 Modelled: 17 Confidence: 18.1% Identity: 47% PDB header:electron transport, photosynthesis Chain: Y: PDB Molecule:protein ycf12; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution Phyre2 1 d3bzka3 2 c1aq5C_ 3 c2xdjF_ 4 d1e52a_ 5 c2oceA_ 6 c2pnvA_ 7 d1nkzb_ 8 d1jb0i_ 9 c2oqqB_ 10 c3okqA_ 11 d1wrda1 12 c1b9uA_ 13 d1pfta_ 14 c3mk7F_ 15 c3ixzB_ 16 d1dl6a_ 17 d1wr6a1 18 c3bz1y_ 19 c2d96A_ 20 c3arcy_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3bzka3 52.2 16 Fold:Tex N-terminal region-like Superfamily:Tex N-terminal region-like Family:Tex N-terminal region-like 2 c1aq5C_ 48.3 24 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 3 c2xdjF_ 40.9 31 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 4 d1e52a_ 40.6 22 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 5 c2oceA_ 36.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 6 c2pnvA_ 32.1 23 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 7 d1nkzb_ 24.9 37 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 8 d1jb0i_ 24.4 18 Fold:Single transmembrane helix Superfamily:Subunit VIII of photosystem I reaction centre, PsaI Family:Subunit VIII of photosystem I reaction centre, PsaI 9 c2oqqB_ 23.1 24 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 10 c3okqA_ 23.0 19 PDB header:protein binding Chain: A: PDB Molecule:bud site selection protein 6; PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6 11 d1wrda1 22.6 17 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 12 c1b9uA_ 20.8 32 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 13 d1pfta_ 20.7 50 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 14 c3mk7F_ 20.2 21 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 15 c3ixzB_ 20.2 28 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 16 d1dl6a_ 20.1 25 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 17 d1wr6a1 19.4 17 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 18 c3bz1y_ 18.8 47 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii protein y; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 19 c2d96A_ 18.6 32 PDB header:transcription Chain: A: PDB Molecule:nuclear factor nf-kappa-b p100 subunit; PDBTitle: solution structure of the death domain of nuclear factor nf-2 kappa-b p100 20 c3arcy_ 18.1 47 PDB header:electron transport, photosynthesis Chain: Y: PDB Molecule:protein ycf12; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 21 c3arcY_ not modelled 18.1 47 PDB header:electron transport, photosynthesis Chain: Y: PDB Molecule:protein ycf12; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 22 d1nu9c2 not modelled 17.8 40 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Staphylocoagulase Family:Staphylocoagulase 23 c1a92B_ not modelled 17.6 24 PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen 24 c3a0hy_ not modelled 17.1 47 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of i-substituted photosystem ii complex 25 c3a0hY_ not modelled 17.1 47 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of i-substituted photosystem ii complex 26 c3m06F_ not modelled 16.9 14 PDB header:protein binding Chain: F: PDB Molecule:tnf receptor-associated factor 2; PDBTitle: crystal structure of traf2 27 c3ls1A_ not modelled 14.8 12 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 28 d1g7oa1 not modelled 14.5 14 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 29 d1o3xa_ not modelled 14.3 24 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 30 d1bf5a1 not modelled 14.2 17 Fold:STAT-like Superfamily:STAT Family:STAT 31 c2jgoB_ not modelled 14.2 30 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 32 c3ljmC_ not modelled 14.2 30 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 33 c3ljmB_ not modelled 14.2 30 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 34 c2jgoC_ not modelled 14.2 30 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 35 c2jgoA_ not modelled 14.2 30 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 36 c3ljmA_ not modelled 14.2 30 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 37 c3efdK_ not modelled 14.1 27 PDB header:immune system Chain: K: PDB Molecule:kcsa; PDBTitle: the crystal structure of the cytoplasmic domain of kcsa 38 c3b37A_ not modelled 14.1 20 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of e. coli aminopeptidase n in complex with tyrosine 39 c3a0by_ not modelled 13.8 47 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of br-substituted photosystem ii complex 40 c2d99A_ not modelled 13.6 42 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-048, a gtf2i domain in human2 cdna 41 c2e3lA_ not modelled 13.5 25 PDB header:transcription Chain: A: PDB Molecule:transcription factor gtf2ird2 beta; PDBTitle: solution structure of rsgi ruh-068, a gtf2i domain in human2 cdna 42 c2dn5A_ not modelled 13.1 50 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-057, a gtf2i domain in human2 cdna 43 c2dbfA_ not modelled 12.9 33 PDB header:signaling protein Chain: A: PDB Molecule:nuclear factor nf-kappa-b p105 subunit; PDBTitle: solution structure of the death domain in human nuclear2 factor nf-kappa-b p105 subunit 44 c2dzrA_ not modelled 12.6 42 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-067, a gtf2i domain in human2 cdna 45 c2dzqA_ not modelled 12.5 42 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i repeat domain- PDBTitle: solution structure of rsgi ruh-066, a gtf2i domain in human2 cdna 46 c1cosA_ not modelled 12.2 30 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 47 c1cosC_ not modelled 12.2 30 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 48 c1cosB_ not modelled 12.2 30 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 49 d1wmub_ not modelled 12.0 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 50 c3a0bY_ not modelled 11.0 47 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of br-substituted photosystem ii complex 51 d1q60a_ not modelled 10.8 42 Fold:GTF2I-like repeat Superfamily:GTF2I-like repeat Family:GTF2I-like repeat 52 c2ed2A_ not modelled 10.8 33 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-069, a gtf2i domain in human2 cdna 53 d1zkea1 not modelled 10.5 38 Fold:ROP-like Superfamily:HP1531-like Family:HP1531-like 54 d1f6ga_ not modelled 10.5 21 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 55 c2dn4A_ not modelled 10.4 50 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-060, a gtf2i domain in human2 cdna 56 c1coiA_ not modelled 10.4 25 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 57 c3c18B_ not modelled 10.3 12 PDB header:transferase Chain: B: PDB Molecule:nucleotidyltransferase-like protein; PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution 58 c3b8eB_ not modelled 10.1 28 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 59 c1ci6B_ not modelled 10.1 19 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 60 c1by0A_ not modelled 10.0 24 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 61 d1ijdb_ not modelled 9.9 39 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 62 c2ejeA_ not modelled 9.3 33 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-071, a gtf2i domain in human2 cdna 63 c3bmbB_ not modelled 8.8 19 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 64 c3eabD_ not modelled 8.7 15 PDB header:cell cycle Chain: D: PDB Molecule:spastin; PDBTitle: crystal structure of spastin mit in complex with escrt iii 65 d1wmga_ not modelled 8.2 47 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 66 d1mlda2 not modelled 8.1 18 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 67 c2d3kA_ not modelled 7.8 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3 68 c3sb1B_ not modelled 7.6 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hydrogenase expression protein; PDBTitle: hydrogenase expression protein huph from thiobacillus denitrificans2 atcc 25259 69 c3r45C_ not modelled 7.6 30 PDB header:nuclear protein Chain: C: PDB Molecule:holliday junction recognition protein; PDBTitle: structure of a cenp-a-histone h4 heterodimer in complex with chaperone2 hjurp 70 c1xtyD_ not modelled 7.6 16 PDB header:hydrolase Chain: D: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase 71 d2ay0a1 not modelled 7.5 33 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:PutA pre-N-terminal region-like 72 d1ab4a_ not modelled 7.3 24 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 73 c3m6nA_ not modelled 7.3 16 PDB header:lyase Chain: A: PDB Molecule:rpff protein; PDBTitle: crystal structure of rpff 74 d1kqfb2 not modelled 7.1 25 Fold:Single transmembrane helix Superfamily:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor Family:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 75 c3ilwA_ not modelled 6.9 18 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain 76 d1x79a_ not modelled 6.9 23 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 77 d1t3wa_ not modelled 6.5 30 Fold:DNA primase DnaG, C-terminal domain Superfamily:DNA primase DnaG, C-terminal domain Family:DNA primase DnaG, C-terminal domain 78 c2vmlD_ not modelled 6.4 29 PDB header:photosynthesis Chain: D: PDB Molecule:phycocyanin beta chain; PDBTitle: the monoclinic structure of phycocyanin from gloeobacter2 violaceus 79 c3pp5A_ not modelled 6.3 17 PDB header:structural protein Chain: A: PDB Molecule:brk1; PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1 80 d2clyc1 not modelled 6.2 13 Fold:Mitochondrial ATP synthase coupling factor 6 Superfamily:Mitochondrial ATP synthase coupling factor 6 Family:Mitochondrial ATP synthase coupling factor 6 81 c2o7hF_ not modelled 6.1 16 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 82 c2ergA_ not modelled 6.0 19 PDB header:transcription activator/dna Chain: A: PDB Molecule:regulatory protein leu3; PDBTitle: crystal structure of leu3 dna-binding domain with a single2 h50c mutation complexed with a 15mer dna duplex 83 c3m0dC_ not modelled 5.8 13 PDB header:signaling protein Chain: C: PDB Molecule:tnf receptor-associated factor 1; PDBTitle: crystal structure of the traf1:traf2:ciap2 complex 84 c3hroA_ not modelled 5.8 26 PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential (trp) channel PDBTitle: crystal structure of a c-terminal coiled coil domain of2 transient receptor potential (trp) channel subfamily p3 member 2 (trpp2, polycystic kidney disease 2) 85 d3ehbb2 not modelled 5.8 7 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 86 c3hrxD_ not modelled 5.7 13 PDB header:lyase Chain: D: PDB Molecule:probable enoyl-coa hydratase; PDBTitle: crystal structure of phenylacetic acid degradation protein paag 87 c2ba2A_ not modelled 5.6 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0134 protein mpn010; PDBTitle: crystal structure of the duf16 domain of mpn010 from2 mycoplasma pneumoniae 88 c2voyE_ not modelled 5.6 20 PDB header:hydrolase Chain: E: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 89 c2hbpA_ not modelled 5.6 14 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 90 d2p90a1 not modelled 5.5 22 Fold:Phosphorylase/hydrolase-like Superfamily:Cgl1923-like Family:Cgl1923-like 91 c2inrA_ not modelled 5.5 27 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 92 c3p8cE_ not modelled 5.5 30 PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex 93 d1in4a1 not modelled 5.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 94 d2h8fb1 not modelled 5.4 13 Fold:Globin-like Superfamily:Globin-like Family:Globins 95 c2novD_ not modelled 5.0 25 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0