Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	Q	S	N	E	Y	F	S	G	K	V	K	S	I	G	F	S	S	S	S	T	G	R	A	S	V	G	V	M	V	E	G	E	Y	T	F	S	T	A	E	P	E	E	M	T	V	I	S	G	A	L	N	V	L	L	P	D	A	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Sequence		D	W	Q	V	Y	E	A	G	S	V	F	N	V	P	G	H	S	E	F	H	L	Q	V	A	E	P	T	S	Y	L	C	R	Y	L
Secondary structure
SS confidence
Disorder			?													?																			?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2oyz chain A domain 1 Region: 2 - 94 Aligned: 92 Modelled: 93 Confidence: 100.0% Identity: 49% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: VPA0057-like Phyre2 PDB 3hqx chain A Region: 3 - 93 Aligned: 91 Modelled: 91 Confidence: 100.0% Identity: 34% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 Phyre2 PDB 3eo6 chain B Region: 3 - 92 Aligned: 90 Modelled: 90 Confidence: 100.0% Identity: 26% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution Phyre2 PDB 1yhf chain A domain 1 Region: 9 - 91 Aligned: 81 Modelled: 82 Confidence: 97.2% Identity: 17% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1287-like Phyre2 PDB 2pyt chain A domain 1 Region: 9 - 87 Aligned: 77 Modelled: 79 Confidence: 96.9% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: EutQ-like Phyre2 PDB 3bcw chain B Region: 11 - 87 Aligned: 76 Modelled: 77 Confidence: 96.9% Identity: 21% PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution Phyre2 PDB 2ozj chain B Region: 7 - 91 Aligned: 83 Modelled: 82 Confidence: 96.8% Identity: 16% PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution Phyre2 PDB 3rns chain A Region: 7 - 86 Aligned: 77 Modelled: 80 Confidence: 96.5% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis Phyre2 PDB 3myx chain A Region: 11 - 87 Aligned: 76 Modelled: 77 Confidence: 96.5% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution Phyre2 PDB 1o5u chain A Region: 32 - 87 Aligned: 55 Modelled: 56 Confidence: 96.5% Identity: 22% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Hypothetical protein TM1112 Phyre2 PDB 2q30 chain C Region: 7 - 93 Aligned: 86 Modelled: 87 Confidence: 96.4% Identity: 10% PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution Phyre2 PDB 3es4 chain B Region: 10 - 87 Aligned: 77 Modelled: 78 Confidence: 96.4% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution Phyre2 PDB 3cew chain A Region: 20 - 91 Aligned: 70 Modelled: 72 Confidence: 96.3% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 Phyre2 PDB 2pfw chain B Region: 8 - 93 Aligned: 83 Modelled: 86 Confidence: 95.8% Identity: 18% PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution Phyre2 PDB 3h8u chain A Region: 7 - 86 Aligned: 79 Modelled: 80 Confidence: 95.8% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution Phyre2 PDB 3lwc chain A Region: 12 - 85 Aligned: 72 Modelled: 74 Confidence: 95.6% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution Phyre2 PDB 3fjs chain C Region: 14 - 90 Aligned: 75 Modelled: 77 Confidence: 95.6% Identity: 15% PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution Phyre2 PDB 2f4p chain A domain 1 Region: 5 - 91 Aligned: 85 Modelled: 87 Confidence: 95.6% Identity: 16% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1287-like Phyre2 PDB 3ht2 chain A Region: 26 - 91 Aligned: 65 Modelled: 66 Confidence: 95.2% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus Phyre2 PDB 3d82 chain A Region: 8 - 91 Aligned: 81 Modelled: 84 Confidence: 95.1% Identity: 21% PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution Phyre2 1 d2oyza1 2 c3hqxA_ 3 c3eo6B_ 4 d1yhfa1 5 d2pyta1 6 c3bcwB_ 7 c2ozjB_ 8 c3rnsA_ 9 c3myxA_ 10 d1o5ua_ 11 c2q30C_ 12 c3es4B_ 13 c3cewA_ 14 c2pfwB_ 15 c3h8uA_ 16 c3lwcA_ 17 c3fjsC_ 18 d2f4pa1 19 c3ht2A_ 20 c3d82A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2oyza1 100.0 49 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 2 c3hqxA_ 100.0 34 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 3 c3eo6B_ 100.0 26 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 4 d1yhfa1 97.2 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 5 d2pyta1 96.9 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 6 c3bcwB_ 96.9 21 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 7 c2ozjB_ 96.8 16 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 8 c3rnsA_ 96.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 9 c3myxA_ 96.5 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 10 d1o5ua_ 96.5 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 11 c2q30C_ 96.4 10 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 12 c3es4B_ 96.4 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 13 c3cewA_ 96.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 14 c2pfwB_ 95.8 18 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 15 c3h8uA_ 95.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 16 c3lwcA_ 95.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution 17 c3fjsC_ 95.6 15 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 18 d2f4pa1 95.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 19 c3ht2A_ 95.2 14 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 20 c3d82A_ 95.1 21 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 21 d1vj2a_ not modelled 95.1 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 22 c3jzvA_ not modelled 94.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 23 d1juha_ not modelled 94.9 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 24 d1v70a_ not modelled 94.8 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 25 c2i45C_ not modelled 94.8 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 26 d2d40a1 not modelled 94.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 27 d1o4ta_ not modelled 94.7 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 28 d1pmia_ not modelled 94.7 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 29 c2fqpD_ not modelled 94.6 9 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 30 d1dgwa_ not modelled 94.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 31 c2opkC_ not modelled 94.1 23 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 32 c2vpvA_ not modelled 94.1 17 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 33 d1uika1 not modelled 94.0 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 34 c2gu9B_ not modelled 94.0 18 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 35 c1cauB_ not modelled 94.0 20 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 36 d1uija2 not modelled 94.0 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 37 c2d40C_ not modelled 94.0 18 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 38 c2oa2A_ not modelled 94.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 39 c3i7dB_ not modelled 93.8 14 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution 40 c3kgzA_ not modelled 93.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 41 c2o8qA_ not modelled 93.7 16 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution 42 d1x82a_ not modelled 93.6 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 43 c3s7eB_ not modelled 93.6 19 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 44 d1j3pa_ not modelled 93.6 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 45 d1uija1 not modelled 93.5 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 46 d2phla2 not modelled 93.3 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 47 c3ibmB_ not modelled 93.2 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 48 c2eaaB_ not modelled 93.2 18 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 49 c2cauA_ not modelled 93.0 15 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 50 d1rc6a_ not modelled 92.8 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 51 c1uijA_ not modelled 92.7 21 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 52 c3h7yA_ not modelled 92.5 6 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 53 c2vqaC_ not modelled 92.3 13 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 54 d1yfua1 not modelled 92.1 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 55 d1sfna_ not modelled 91.9 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 56 d1j58a_ not modelled 91.8 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 57 d2b8ma1 not modelled 91.8 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 58 c1sefA_ not modelled 91.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 59 d1sefa_ not modelled 91.3 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 60 d1y3ta1 not modelled 91.3 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like 61 d2phda1 not modelled 90.6 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 62 c3kscD_ not modelled 90.1 15 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 63 d1lr5a_ not modelled 89.9 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 64 d2phla1 not modelled 89.9 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 65 d3bu7a1 not modelled 89.8 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 66 c3bu7A_ not modelled 89.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 67 c3l2hD_ not modelled 89.5 24 PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution 68 d1fxza2 not modelled 89.3 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 69 d1sq4a_ not modelled 89.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 70 d1y9qa2 not modelled 88.8 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 71 d1od5a2 not modelled 88.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 72 c3ehkC_ not modelled 88.6 20 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 73 d1uika2 not modelled 88.4 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 74 c2oziA_ not modelled 88.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 75 c1fxzC_ not modelled 87.8 14 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 76 d2bnma2 not modelled 87.8 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 77 c3qacA_ not modelled 87.7 17 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 78 d2et1a1 not modelled 87.1 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 79 c3h1yA_ not modelled 87.0 10 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 80 c3kglB_ not modelled 83.8 14 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 81 c3c3vA_ not modelled 83.7 20 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 82 c2e9qA_ not modelled 82.6 19 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 83 c2d5fB_ not modelled 77.1 15 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 84 c2bnoA_ not modelled 74.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 85 d1zvfa1 not modelled 72.4 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 86 d1zrra1 not modelled 71.5 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 87 d1fxza1 not modelled 71.3 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 88 d1qwra_ not modelled 59.9 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 89 d1zx5a1 not modelled 56.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 90 c2e5yA_ not modelled 54.7 11 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase epsilon chain; PDBTitle: epsilon subunit and atp complex of f1f0-atp synthase from2 the thermophilic bacillus ps3 91 c3es1A_ not modelled 52.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 92 c3cf6E_ not modelled 52.2 20 PDB header:signaling protein/gtp-binding protein Chain: E: PDB Molecule:rap guanine nucleotide exchange factor (gef) 4; PDBTitle: structure of epac2 in complex with cyclic-amp and rap 93 d1od5a1 not modelled 41.7 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 94 d1xeaa2 not modelled 39.3 9 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 95 c3o14B_ not modelled 35.9 14 PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution 96 d1aqta2 not modelled 29.9 14 Fold:Epsilon subunit of F1F0-ATP synthase N-terminal domain Superfamily:Epsilon subunit of F1F0-ATP synthase N-terminal domain Family:Epsilon subunit of F1F0-ATP synthase N-terminal domain 97 d1jmla_ not modelled 26.4 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 98 d1hz6a_ not modelled 25.7 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 99 c2rq7A_ not modelled 25.3 13 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase epsilon chain; PDBTitle: solution structure of the epsilon subunit chimera combining2 the n-terminal beta-sandwich domain from t. elongatus bp-13 f1 and the c-terminal alpha-helical domain from spinach4 chloroplast f1 100 c3irpX_ not modelled 24.4 18 PDB header:cell adhesion Chain: X: PDB Molecule:uro-adherence factor a; PDBTitle: crystal structure of functional region of uafa from staphylococcus2 saprophyticus at 1.50 angstrom resolution 101 c1y9qA_ not modelled 24.2 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 102 c1xctL_ not modelled 23.9 29 PDB header:immune system Chain: L: PDB Molecule:protein l; PDBTitle: complex hcv core-fab 19d9d6-protein l mutant (d55a, l57h, y64w) in2 space group p21212 103 d1mhhe_ not modelled 23.1 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 104 d1pg5b2 not modelled 22.6 20 Fold:Rubredoxin-like Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 105 d1bbpa_ not modelled 22.2 38 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 106 d2ptla_ not modelled 20.3 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 107 d1ywka1 not modelled 20.3 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:KduI-like 108 d1k52a_ not modelled 20.2 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0