Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	L	E	Q	G	W	L	V	G	A	R	R	V	P	S	P	H	Y	D	C	R	P	D	D	E	T	P	T	L	L	V	V	H	N	I	S	L	P	P	G	E	F	G	G	P	W	I	D	A	L	F	T	G	T	I	D	P	Q	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?													?	?	?	?	?	?																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	P	F	F	A	E	I	A	H	L	R	V	S	A	H	C	L	I	R	R	D	G	E	I	V	Q	Y	V	P	F	D	K	R	A	W	H	A	G	V	S	Q	Y	Q	G	R	E	R	C	N	D	F	S	I	G	I	E	L	E	G	T
Secondary structure
SS confidence
Disorder		?					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	T	L	A	Y	T	D	A	Q	Y	Q	Q	L	A	A	V	T	R	A	L	I	D	C	Y	P	D	I	A	K	N	M	T	G	H	C	D	I	A	P	D	R	K	T	D	P	G	P	A	F	D	W	A	R	F	R	V	L	V	S	K
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.
Sequence		E	T	T
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1j3g chain A Region: 1 - 183 Aligned: 183 Modelled: 183 Confidence: 100.0% Identity: 87% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2bh7 chain A Region: 2 - 176 Aligned: 150 Modelled: 155 Confidence: 100.0% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms Phyre2 PDB 2bgx chain A domain 2 Region: 6 - 176 Aligned: 151 Modelled: 151 Confidence: 100.0% Identity: 33% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 3hma chain A Region: 1 - 178 Aligned: 150 Modelled: 165 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase xlya; PDBTitle: amidase from bacillus subtilis Phyre2 PDB 1yb0 chain A domain 1 Region: 1 - 180 Aligned: 152 Modelled: 159 Confidence: 100.0% Identity: 21% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1yck chain A domain 1 Region: 8 - 175 Aligned: 154 Modelled: 161 Confidence: 100.0% Identity: 16% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2cb3 chain A domain 1 Region: 14 - 176 Aligned: 147 Modelled: 150 Confidence: 100.0% Identity: 14% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2xz4 chain A Region: 8 - 176 Aligned: 154 Modelled: 164 Confidence: 100.0% Identity: 16% PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfz ectodomain of the2 peptidoglycan recognition protein lf Phyre2 PDB 2rkq chain A Region: 14 - 178 Aligned: 150 Modelled: 160 Confidence: 100.0% Identity: 15% PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein-sd; PDBTitle: crystal structure of drosophila peptidoglycan recognition2 protein sd (pgrp-sd) Phyre2 PDB 1oht chain A Region: 8 - 176 Aligned: 154 Modelled: 169 Confidence: 100.0% Identity: 17% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1oht chain A Region: 8 - 176 Aligned: 154 Modelled: 168 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:cg14704 protein; PDBTitle: peptidoglycan recognition protein-lb Phyre2 PDB 2f2l chain X domain 1 Region: 8 - 174 Aligned: 152 Modelled: 162 Confidence: 100.0% Identity: 14% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1sk4 chain A Region: 8 - 175 Aligned: 152 Modelled: 159 Confidence: 100.0% Identity: 14% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1lba chain A Region: 21 - 182 Aligned: 138 Modelled: 155 Confidence: 100.0% Identity: 28% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 3lat chain B Region: 3 - 180 Aligned: 155 Modelled: 156 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:bifunctional autolysin; PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie Phyre2 PDB 1s2j chain A Region: 8 - 174 Aligned: 152 Modelled: 154 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa; PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa Phyre2 PDB 1sxr chain A Region: 8 - 176 Aligned: 153 Modelled: 164 Confidence: 100.0% Identity: 14% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 2f2l chain A domain 1 Region: 8 - 174 Aligned: 155 Modelled: 162 Confidence: 100.0% Identity: 11% Fold: N-acetylmuramoyl-L-alanine amidase-like Superfamily: N-acetylmuramoyl-L-alanine amidase-like Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 3ep1 chain B Region: 8 - 176 Aligned: 149 Modelled: 154 Confidence: 100.0% Identity: 11% PDB header:immune system Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana Phyre2 PDB 2xz8 chain A Region: 14 - 146 Aligned: 113 Modelled: 128 Confidence: 99.7% Identity: 7% PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfw ectodomain of the2 peptidoglycan recognition protein lf Phyre2 1 d1j3ga_ 2 c2bh7A_ 3 d2bgxa2 4 c3hmaA_ 5 d1yb0a1 6 d1ycka1 7 d2cb3a1 8 c2xz4A_ 9 c2rkqA_ 10 d1ohta_ 11 c1ohtA_ 12 d2f2lx1 13 d1sk4a_ 14 d1lbaa_ 15 c3latB_ 16 c1s2jA_ 17 d1sxra_ 18 d2f2la1 19 c3ep1B_ 20 c2xz8A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1j3ga_ 100.0 87 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 2 c2bh7A_ 100.0 35 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms 3 d2bgxa2 100.0 33 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 4 c3hmaA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase xlya; PDBTitle: amidase from bacillus subtilis 5 d1yb0a1 100.0 21 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 6 d1ycka1 100.0 16 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 7 d2cb3a1 100.0 14 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 8 c2xz4A_ 100.0 16 PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfz ectodomain of the2 peptidoglycan recognition protein lf 9 c2rkqA_ 100.0 15 PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein-sd; PDBTitle: crystal structure of drosophila peptidoglycan recognition2 protein sd (pgrp-sd) 10 d1ohta_ 100.0 17 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 11 c1ohtA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:cg14704 protein; PDBTitle: peptidoglycan recognition protein-lb 12 d2f2lx1 100.0 14 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 13 d1sk4a_ 100.0 14 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 14 d1lbaa_ 100.0 28 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 15 c3latB_ 100.0 19 PDB header:hydrolase Chain: B: PDB Molecule:bifunctional autolysin; PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie 16 c1s2jA_ 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa; PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa 17 d1sxra_ 100.0 14 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 18 d2f2la1 100.0 11 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 19 c3ep1B_ 100.0 11 PDB header:immune system Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana 20 c2xz8A_ 99.7 7 PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfw ectodomain of the2 peptidoglycan recognition protein lf 21 d2dsta1 not modelled 50.7 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:TTHA1544-like 22 c3ds8A_ not modelled 40.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 23 c3pohA_ not modelled 36.7 9 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f1; PDBTitle: crystal structure of an endo-beta-n-acetylglucosaminidase (bt_3987)2 from bacteroides thetaiotaomicron vpi-5482 at 1.55 a resolution 24 c1cr6A_ not modelled 28.1 12 PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor 25 c3d8mA_ not modelled 23.7 36 PDB header:virus/viral protein Chain: A: PDB Molecule:baseplate protein, receptor binding protein; PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2 26 d1hpla2 not modelled 23.1 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 27 d1zrua1 not modelled 22.1 36 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Lactophage receptor-binding protein head domain 28 c3da0C_ not modelled 21.9 36 PDB header:viral protein Chain: C: PDB Molecule:cleaved chimeric receptor binding protein from PDBTitle: crystal structure of a cleaved form of a chimeric receptor binding2 protein from lactococcal phages subspecies tp901-1 and p2 29 c2y96A_ not modelled 21.4 16 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase dupd1; PDBTitle: structure of human dual-specificity phosphatase 27 30 c2pplA_ not modelled 19.4 28 PDB header:hydrolase Chain: A: PDB Molecule:pancreatic lipase-related protein 1; PDBTitle: human pancreatic lipase-related protein 1 31 c1hplB_ not modelled 18.6 16 PDB header:hydrolase(carboxylic esterase) Chain: B: PDB Molecule:lipase; PDBTitle: horse pancreatic lipase. the crystal structure at 2.32 angstroms resolution 32 d1etha2 not modelled 18.0 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 33 c2pvsB_ not modelled 17.3 20 PDB header:hydrolase Chain: B: PDB Molecule:pancreatic lipase-related protein 2; PDBTitle: structure of human pancreatic lipase related protein 22 mutant n336q 34 d1bu8a2 not modelled 16.3 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 35 d1rp1a2 not modelled 16.1 24 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 36 c1rp1A_ not modelled 16.0 24 PDB header:hydrolase Chain: A: PDB Molecule:pancreatic lipase related protein 1; PDBTitle: dog pancreatic lipase related protein 1 37 c1gplA_ not modelled 15.6 16 PDB header:serine esterase Chain: A: PDB Molecule:rp2 lipase; PDBTitle: rp2 lipase 38 d1lpbb2 not modelled 15.3 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 39 d1xw8a_ not modelled 13.3 15 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 40 c3mlcC_ not modelled 12.5 11 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 41 d1gpla2 not modelled 11.4 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 42 c2zycA_ not modelled 10.5 4 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 43 c3lp5A_ not modelled 10.4 28 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 44 c2gwoC_ not modelled 10.0 20 PDB header:hydrolase Chain: C: PDB Molecule:dual specificity protein phosphatase 13; PDBTitle: crystal structure of tmdp 45 c3lcrA_ not modelled 10.0 14 PDB header:hydrolase Chain: A: PDB Molecule:tautomycetin biosynthetic pks; PDBTitle: thioesterase from tautomycetin biosynthhetic pathway 46 d1jmxa1 not modelled 9.5 15 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 47 d1vhra_ not modelled 8.4 17 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 48 c2x5eA_ not modelled 8.3 13 PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa 49 d1v6ta_ not modelled 8.2 11 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 50 d2dfaa1 not modelled 7.9 10 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 51 d2acya_ not modelled 7.8 20 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 52 c2r37A_ not modelled 7.7 27 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 3; PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant) 53 d2ccaa2 not modelled 7.7 15 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 54 c3eurA_ not modelled 7.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the c-terminal domain of uncharacterized protein2 from bacteroides fragilis nctc 9343 55 d1cvla_ not modelled 7.0 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 56 c3fleB_ not modelled 6.9 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. 57 d1mwwa_ not modelled 6.5 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:Hypothetical protein HI1388.1 58 d3b5ea1 not modelled 6.4 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/thioesterase 1 59 d1pbya1 not modelled 6.4 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 60 d1gp1a_ not modelled 6.3 36 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 61 d2ccaa1 not modelled 6.2 16 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 62 c2p04B_ not modelled 6.1 32 PDB header:transferase Chain: B: PDB Molecule:signal transduction histidine kinase; PDBTitle: 2.1 ang structure of the dimerized pas domain of signal transduction2 histidine kinase from nostoc punctiforme pcc 73102 with homology to3 the h-noxa/h-noba domain of the soluble guanylyl cyclase 63 d1jfua_ not modelled 6.0 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 64 d1otfa_ not modelled 5.9 17 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 65 d3buxb3 not modelled 5.9 38 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 66 d1xhoa_ not modelled 5.8 4 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 67 c1xhoB_ not modelled 5.8 4 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:chorismate mutase; PDBTitle: chorismate mutase from clostridium thermocellum cth-682 68 d1yt3a2 not modelled 5.8 6 Fold:SAM domain-like Superfamily:HRDC-like Family:RNase D C-terminal domains 69 d1rbli_ not modelled 5.7 14 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 70 c3fi7A_ not modelled 5.7 11 PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain 71 c1itkB_ not modelled 5.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from haloarcula2 marismortui 72 c3dwvB_ not modelled 5.6 55 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione peroxidase-like protein; PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase,2 oxidized form 73 d2choa2 not modelled 5.6 21 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 74 c2zyiB_ not modelled 5.6 17 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 75 c2op8A_ not modelled 5.5 11 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 76 d2h1ia1 not modelled 5.4 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/thioesterase 1 77 c2e0tA_ not modelled 5.4 12 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 26; PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens 78 d1svdm1 not modelled 5.1 24 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 79 d1uzhc1 not modelled 5.1 10 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 80 d2f8aa1 not modelled 5.1 27 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 81 c3hf2A_ not modelled 5.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:bifunctional p-450/nadph-p450 reductase; PDBTitle: crystal structure of the i401p mutant of cytochrome p450 bm3 82 c1qgeD_ not modelled 5.1 19 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 83 c2obiA_ not modelled 5.1 36 PDB header:oxidoreductase Chain: A: PDB Molecule:phospholipid hydroperoxide glutathione PDBTitle: crystal structure of the selenocysteine to cysteine mutant2 of human phospholipid hydroperoxide glutathione peroxidase3 (gpx4)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0