Job Description P77215 Confidence 100.00% Date Thu Jan 5 12:26:27 GMT 2012 Rank 92 Aligned Residues 310 % Identity 16% Template c1kczA_ PDB info PDB header:lyase Chain: A: PDB Molecule:beta-methylaspartase; PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex. Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.													.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	K	Q	V	R	A	W	F	T	G	G	A	T	A	E	K	G	A	G	G	G	D	Y	H	D	Q	G	A	N	H	W	I	D	D	H	I	A	T	P	M	.	.	.	.	.	.	.	.	.	.	.	.	S	K	Y	R	D	Y	E	Q	S	R	Q	S	F	G	I	N	V	L	G	T	L	V	V	E	V	E	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template Sequence		K	I	V	D	V	L	C	T	P	G	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	Y	F	D	D	Q	R	A	I	K	K	G	A	G	H	D	G	F	T	Y	T	G	S	T	V	T	E	G	F	T	Q	V	R	Q	K	G	E	S	I	.	.	.	.	.	S	V	L	L	V	L
Template Known Secondary structure		B												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S										T	T					T	T				S				S	T	T		S	S	S								.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.																		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.															.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	G	Q	T	G	F	A	V	S	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	S	A	T	L	Y	Y	S	G	S	G	G	L	V	M	N	T	I	S	C	V	D	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		E	D	G	Q	V	A	H	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R	D	P	L	F	L	A	K	D	F	I	P	V	I	E	K	E	I	A	P	K	L	I	G	R	E	I	T	N	F	K	P	M	A	E	E	F	D	K	M	T	V	N	G	N	.	.	.	.	.	.	.	R	L	H	T	A	I	R	Y
Template Known Secondary structure		T	T	S											T	T	T	T	S	T	T	S		S															T					T	T		B																	T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.										.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.													.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.													.	.	.	.	.
Query Sequence		A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	G	A	V	R	D	.	.	.	.	.	.	.	.	.	E	I	Q	F	Y	A	T	G	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	.	.	.	.	.	.	P	T	H	W	G	P	H	D	G	D	A	G	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.													.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.													.	.	.	.	.
Template Conservation
Template Sequence		G	I	T	Q	A	I	L	D	A	V	A	K	T	R	K	V	T	M	A	E	V	I	R	D	E	Y	N	P	G	A	E	I	N	A	V	P	V	F	A	Q	S	G	D	D	R	Y	D	N	V	D	K	M	I	I	K	E	A	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	L	K	G	E	K	L	L
Template Known Secondary structure																T	S											S	T	T													T	T		T	T									T	T		S																T	T	S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
				199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.
Predicted Secondary structure		.	.																									.	.	.	.	.	.																									.	.	.										.	.	.	.
Query SS confidence		.	.																									.	.	.	.	.	.																									.	.	.										.	.	.	.
Query Sequence		.	.	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C	G	E	D	F	W	L	M	L	D	.	.	.	.	.	.	C	W	M	S	Q	D	V	N	Y	A	T	K	L	A	H	A	C	A	P	Y	N	L	K	W	.	.	.	I	E	E	C	L	P	P	Q	Q	.	.	.	.	Y	E	S	Y	R	E	L	K
Query Conservation		.	.																									.	.	.	.	.	.																									.	.	.										.	.	.	.
Alig confidence		.	.																									.	.	.	.	.	.																									.	.	.										.	.	.	.
Template Conservation
Template Sequence		E	Y	V	K	W	L	R	D	R	I	I	K	L	R	V	R	E	D	Y	A	P	I	F	H	I	D	V	Y	G	T	I	G	A	A	F	D	V	D	I	K	A	M	A	D	Y	I	Q	T	L	A	E	A	A	K	P	F	H	L	R	I	E	G	P	M	D	V	E	D	R	Q	K	Q	M	E	A	M	R	D	L	R
Template Known Secondary structure																S	S	T	T										T	T						T	T	T																	T	T	S							S	B			S	S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		264	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.																							.																																							.
Query SS confidence						.	.	.																							.																																							.
Query Sequence		R	N	A	P	.	.	.	V	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	S	E	.	T	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	I	A	K	S	R	G	Q	L	V	V	P	H	G	S	.	S	V	Y	S	H	H	A	V	I	T	F
Query Conservation						.	.	.																							.																																							.
Alig confidence						.	.	.																							.																																							.
Template Conservation
Template Sequence		A	E	L	D	G	R	G	V	D	A	E	L	V	A	D	E	W	C	N	T	V	E	D	V	K	F	F	T	D	N	K	A	G	H	M	V	Q	I	K	T	P	D	L	G	G	V	N	N	I	A	D	A	I	M	Y	C	K	A	N	G	M	G	A	Y	C	G	G	T	N	E	T	N	R	S	A	E	V	T	T	N
Template Known Secondary structure								T									T	T			S										T	T		S	S						T	G	G	G	S	S	T													T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		339	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	T	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	M	A	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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