92 c1kczA_ Probab=100.00  E-value=0  Score=362.60  Aligned_columns=310  Identities=16%

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCC------------HHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             01126678786143323347642235665112355430532------------024653046665242100069999993
Q batch____         5 KIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATPM------------SKYRDYEQSRQSFGINVLGTLVVEVEA   72 (401)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~i~V~i~T   72 (401)
                      ||+.|++.-..+                 ++|.+++-|.-.            |.++.|+.-|+.....     +|++++
T Consensus         2 ~i~~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~g~~~~~~~~t~~f~~~r~~~~~v-----lv~l~l   59 (412)
T c1kczA_           2 KIVDVLCTPGLT-----------------GFYFDDQRAIKKGAGHDGFTYTGSTVTEGFTQVRQKGESI-----SVLLVL   59 (412)
T ss_dssp             BEEEEEEEEECC-----------------SSEEECHHHHHTTCEEETTEEESCCCSTTCSSSEEECCEE-----EEEEEE
T ss_pred             CCEEEEEECCCC-----------------CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHEECCCEE-----EEEEEE
T ss_conf             332598731345-----------------5423402312566776675335687466611220001138-----999997


Q ss_pred             CCCCEEEEECCC--------------CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             899569974488--------------078999999987777548670108999999998540356530389988999999
Q batch____        73 ENGQTGFAVSTA--------------GEMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLSATLYYSGSGGLVMNTISCVDL  138 (401)
Q Consensus        73 d~Gi~G~Ge~~~--------------~~~~~~~i~~~lap~LiG~dp~~~e~l~~~l~~~~~~~~g~~g~~~~AisaIDi  138 (401)
                      |||.+|||||..              ......+|++.|+|.|+|+|+.+++.++.+|.+......       +|.+|||+
T Consensus        60 ~DG~vG~GE~~~~~~tg~~~~~~~~~a~~i~a~ie~~LaP~LiG~d~~~~~~l~~~l~~~~~~~~-------~AkAAi~~  132 (412)
T c1kczA_          60 EDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFDKMTVNGN-------RLHTAIRY  132 (412)
T ss_dssp             TTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEETTE-------ECCHHHHH
T ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHCCCC-------CCHHHHHH
T ss_conf             79945852034633446333220110688999872001166518885338999999877513787-------61279999


Q ss_pred             HHHHHHHHHCCCCHHHHCCCCCCC---------CEEEEEECCCHHHHHHHHHHHHHC------CCCCCCCCCCCC-----
Q ss_conf             999999988299178971899887---------222887359988999989889723------478321005589-----
Q batch____       139 ALWDLFGKVVGLPVYKLLGGAVRD---------EIQFYATGARPDLAKEMGFIGGKM------PTHWGPHDGDAG-----  198 (401)
Q Consensus       139 ALWDl~GK~~g~Pv~~LLGG~~r~---------~vp~Yas~~~~~~~~~~g~~~~k~------~~~~~~~k~~~~-----  198 (401)
                      ||||+++|++++|++++|||..+.         .+|+|++....+.....-......      ++...|.|.+.+     
T Consensus       133 Al~dal~~a~g~pl~~~Lgg~l~~~~~~~~~~~~iPi~~~~g~~~~~~~~e~i~~~~~~~~~~g~~~~Kik~G~~~~~~~  212 (412)
T c1kczA_         133 GITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLL  212 (412)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCCTTSHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHH
T ss_conf             99999999973067547878752201576752223201115865554258999988877766201310120157632013


Q ss_pred             --HHHHHHHHHHHHHHCCCCCEEEEE------CCCCCCHHHHHHHHHHHHHCCEEE---EECCCCCCC----HHHHHHHH
Q ss_conf             --899999999999974998599981------598989999999999745464157---845588279----89999999
Q batch____       199 --IRKDAAMVADMREKCGEDFWLMLD------CWMSQDVNYATKLAHACAPYNLKW---IEECLPPQQ----YESYRELK  263 (401)
Q Consensus       199 --~~~d~~~v~avRe~vG~d~~L~vD------aN~~w~~~~A~~~~~~Le~~~i~w---iEeP~~~dd----~~~~~~L~  263 (401)
                        ++.|+++++++|+++|+...+++|      +|++||+++|+++++.|+++++.|   ||||++++|    +++++.|+
T Consensus       213 ~~~~~d~~ri~air~~~G~~~~lriDv~~~~dAN~aws~~~A~~~~~~L~~~~l~~~l~IEQPv~~~d~~~~~e~l~~Lr  292 (412)
T c1kczA_         213 EYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLR  292 (412)
T ss_dssp             HHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEECSBCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             47999999999998506988558773010223336999899999999998648996178844767112023677888999


Q ss_pred             HHCC---CCCCEECCCCCCCHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCC-CHHHHHHHHHH
Q ss_conf             8537---9984322777589999999996-87859972244238379999999999971990895298-44899999999
Q batch____       264 RNAP---VGMMVTSGEHHGTLQSFRTLSE-TGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGS-SVYSHHAVITF  338 (401)
Q Consensus       264 ~~~~---~~ipIa~gE~~~~~~~~~~l~~-~avDiiq~d~~~~GGit~~~kia~lA~a~gi~v~pH~~-~~~~~~~a~~~  338 (401)
                      .+.+   +++||++||+++|.++++++++ +++|++|+|++|+|||+++++++++|+++|++++.|++ .+.++.++++|
T Consensus       293 ~~l~~r~~~vPI~aDEsv~t~~d~~~~i~~~a~d~inIKl~k~GGi~~a~~~~~~A~~~Gi~~~~g~~~Es~i~~~a~~h  372 (412)
T c1kczA_         293 AELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTNETNRSAEVTTN  372 (412)
T ss_dssp             HHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHH
T ss_pred             HHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf             98740578980881643389999999998379809971744609989999999999986980999535320589999999


Q ss_pred             HHHCC
Q ss_conf             85001
Q batch____       339 TNTPF  343 (401)
Q Consensus       339 ~~a~~  343 (401)
                      ++++.
T Consensus       373 ~a~a~  377 (412)
T c1kczA_         373 IGMAC  377 (412)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             88651