Job Description P77538 Confidence 99.68% Date Thu Jan 5 12:30:21 GMT 2012 Rank 194 Aligned Residues 240 % Identity 17% Template c1lnsA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:x-prolyl dipeptidyl aminopetidase; PDBTitle: crystal structure analysis of the x-prolyl dipeptidyl2 aminopeptidase from lactococcus lactis Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	I	Y	G	P	D	P	W	S	A	E	S	V	E	F	T	A	.	.	.	.	.	K	D	G	T	R	.	.	L	Q	G	W	F	I	P	S	S	T	G	P	A	D	N	A	I	A	T	I	I	H	A	H	G	N	A	G	N	M	S	A	H	W	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.						.	.											.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.
Template Sequence		L	A	T	F	D	S	S	L	L	E	R	E	V	L	W	V	E	S	P	V	D	S	E	Q	R	G	E	N	D	L	I	K	I	Q	I	I	R	P	K	S	.	.	.	T	E	K	L	P	V	V	M	T	A	S	P	Y	H	L	G	I	N	D	K	A	N	D	L	A	L	H	D	M	N	V	E	L	E	E	K	T
Template Known Secondary structure			S		S		G	G	G											S			T	T		S	S	S														.	.	.	S	S										S	S	T	T
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
																																								97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	S	W	L	P	E	R	N	F	N	V	F	M	F	D	Y	R	G	F	G	K	S	K	G	T	P	S	Q	A	G	L	L	D	D	T	Q	S	A	I	N	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	H	E	I	H	V	E	Q	K	L	P	Q	K	L	S	A	K	A	K	E	L	P	I	V	D	K	A	P	Y	R	F	T	H	G	W	T	Y	S	L	N	D	Y	F	L	T	R	G	F	A	S	I	Y	V	A	G	V	G	T	R	S	S	D	G	F	Q	T	S	G	D	Y	Q	Q	I	Y	S	M	T	A	V	I
Template Known Secondary structure		S																								S	S		S		B															T	T	T									T	T	S	T	T	S		S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		139	140	.	.																	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	V	N	P	Q	R	L	V	L	F	G	Q	S	I	G	G	A	N	I	L	D	V	I	G	R	G	D	R	E	G	I	R	A	V	I	L	D	S	T	F	A	S	Y	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		D	W	L	N	G	R	A	R	A	Y	T	S	R	K	K	T	H	E	I	K	A	S	W	A	N	G	K	V	A	M	T	G	K	S	Y	L	G	T	M	A	Y	G	A	A	T	T	G	.	V	E	G	L	E	L	I	L	A	E	A	G	I	S	S	W	Y	N	Y	Y	R	E	N	G	L	V	R	S	P	G	G	F
Template Known Secondary structure					T	T	S	S				S	S	T	T								T	T											T											T	T	T	.		T	T								S			S	B						B	S	S	S	S	B				T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
																																						189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	N	Q	M	I	P	G	S	G	Y	L	L	D	E	S	Y	S	G	E	N	Y	I	A	S	V	S	P	I	P	L	L	L	I	H	G	K	A	D	H	V	I	P	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	E	D	L	D	V	L	A	A	L	T	Y	S	R	N	L	D	G	A	D	F	L	K	G	N	A	E	Y	E	K	R	L	A	E	M	T	A	A	L	D	R	K	S	G	D	Y	N	Q	F	W	H	D	R	N	Y	L	I	N	T	D	K	V	K	A	D	V	L	I	V	H	G	L	Q	D	W	N	V	T	P
Template Known Secondary structure		T	T												G	G	G	G	S																								T	T	T									T	T	B	G	G	G	G	G	G	G			S								T	T			S	S		T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		Q	H	S	E	K	L	Y	S	L	A	K	E	P	.	.	K	R	L	I	L	I	P	D	G	E	H	I	D	A	F	S	D	R	H	G	D	V	Y	R	E	Q	M	V	D	F	I	L	S	A	L	N	P	Q	N
Query Conservation															.	.
Alig confidence															.	.									.													.
Template Conservation																									.													.
Template Sequence		E	Q	A	Y	N	F	W	K	A	L	P	E	G	H	A	K	H	A	F	L	H	R	G	.	A	H	I	Y	M	N	S	W	Q	S	I	D	.	F	S	E	T	I	N	A	Y	F	V	A	K	L	L	D	R	D
Template Known Secondary structure											S		T	T									S		.	S	S				T	T	B	S	S			.														T	T
Template Predicted Secondary structure																									.													.
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.	500	.	.	.	.	.	.	.	.		.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions