Job Description P00954 Confidence 100.00% Date Thu Jan 5 10:57:18 GMT 2012 Rank 16 Aligned Residues 280 % Identity 20% Template c2cyaA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase from aeropyrum pernix Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		T	K	P	I	V	F	S	G	A	Q	P	S	G	E	L	T	I	G	N	Y	M	G	A	L	R	Q	W	V	N	M	Q	D	D	Y	H	C	I	Y	C	I	V	D	Q	H	A	I	T	V	R	Q	.	.	.	D	A	Q	K	L	R	K	A	T	L	D	T	L	A	L	Y	L	A	C	G	I	D	P	E	K	S	T
Query Conservation																																																				.	.	.
Alig confidence																																																				.	.	.
Template Conservation
Template Sequence		A	R	I	K	G	Y	I	G	Y	E	P	S	G	V	A	H	I	G	W	L	V	W	M	Y	K	V	K	D	L	V	E	A	G	V	D	F	S	V	L	E	A	T	W	H	A	Y	I	N	D	K	L	G	G	D	M	D	L	I	R	A	A	A	R	I	V	R	R	V	M	E	A	A	G	V	P	V	E	R	V	R
Template Known Secondary structure		S												S	S		B	T															T	T															T	T	G	G	G	G																			T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	V	Q	S	H	V	P	E	H	A	Q	L	G	W	A	L	N	C	Y	T	Y	F	G	E	L	S	R	M	T	Q	F	K	D	K	S	A	R	Y	A	E	N	I	N	A	G	L	F	D	Y	P	V	L	M	A	A	D	I	L	L	Y	Q	T	N	L	V	P	V	G	E	D	Q	K	Q	H	L	E	L	S	R
Query Conservation
Alig confidence																																		.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		F	V	D	A	E	E	L	A	S	D	K	D	Y	W	G	L	V	I	R	V	A	K	R	A	S	L	A	R	V	R	R	A	.	.	.	.	L	A	E	E	A	E	V	D	A	S	K	L	I	Y	P	L	M	Q	V	S	D	I	F	Y	M	D	L	D	I	A	L	G	G	M	D	Q	R	K	A	H	M	L	A	R
Template Known Secondary structure										T														T	S							T	T	.	.	.	.				G	G	G	S		T																T	T		S						G	G	G
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	Q	R	F	N	A	L	Y	G	E	I	F	K	V	P	E	P	F	I	P	K	S	G	A	R	V	M	S	L	L	E	P	T	K	K	M	S	K	S	D	D	N	R	N	N	V	I	G	L	L	E	D	P	K	S	V	V	K	K	I	K	R	A	V	T	D	S	D	E	P	P	V	V	R	Y	D	V	Q
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.																		.	.																											.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																		.	.																											.	.	.	.	.	.	.	.
Template Sequence		D	V	A	E	K	L	G	R	K	K	P	V	A	I	H	T	P	.	.	.	.	.	.	.	.	.	.	I	I	S	S	L	Q	G	P	V	K	M	S	K	S	K	P	E	.	.	T	A	V	F	V	V	D	S	D	D	D	I	R	R	K	I	R	K	A	Y	C	P	A	K	Q	V	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	T	T											.	.	.	.	.	.	.	.	.	.			B		S	S				B			S	S	S	G	G	.	.	G	S		B	T	T												T	S				T	T			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																		.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.											.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.											.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		N	K	A	G	V	S	N	L	L	D	I	L	S	A	.	.	.	.	.	.	.	.	.	.	V	T	G	Q	S	I	P	E	L	E	K	Q	F	E	G	K	M	Y	.	.	G	H	L	K	G	E	V	A	D	A	V	S	G	M	L	T	E	L	Q	E	R	Y	H	R	F	R	N	D	E	A	F	L	Q	Q	V
Query Conservation																.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		Q	G	N	P	V	L	E	I	A	R	Y	I	L	F	A	R	D	G	F	T	L	R	V	D	V	E	Y	T	S	Y	E	E	L	E	R	D	Y	T	D	G	R	L	H	P	L	D	L	K	N	A	V	A	E	S	L	I	E	V	V	R	P	I	R	G	A	V	L	G	D	P	A	M	K	R	A	L	E	A	I
Template Known Secondary structure		T	T										T	T	T	T	S	T	T										S	S										T	T		S																										T	S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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