Job Description P77434 Confidence 100.00% Date Thu Jan 5 12:29:17 GMT 2012 Rank 73 Aligned Residues 329 % Identity 17% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.						.	.
Query SS confidence																																				.	.	.	.						.	.
Query Sequence		G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	.	.	.	.	G	Y	S	T	S	.	.	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K
Query Conservation																																				.	.	.	.						.	.
Alig confidence																																				.	.	.	.						.	.																		.
Template Conservation																																																																.
Template Sequence		Q	G	C	S	A	D	V	A	S	G	D	G	L	F	L	E	E	Y	W	K	Q	H	K	E	A	S	A	V	L	V	S	P	W	H	R	M	S	Y	F	F	N	P	V	S	N	F	I	S	F	E	L	E	K	T	I	K	E	L	H	E	V	V	.	G	N	A	A	A	K	D	R	Y	I	V	F	G	V	G	V	T
Template Known Secondary structure		T	T							S				G	G	G					T	T	S										T	T	T	T		S	S	S		S	S			T	T																	.	T		B			T	T							S
Template Predicted Secondary structure																																																																.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																		.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.
Query Sequence		E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	.	.	.	.	.	.	.	.	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P
Query Conservation																		.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.
Template Sequence		Q	L	I	H	G	L	V	I	S	L	S	P	N	M	T	A	T	P	D	A	P	E	S	K	V	V	A	H	A	P	F	Y	P	V	F	R	E	Q	T	K	Y	F	D	K	K	G	Y	V	W	A	G	.	.	.	.	.	.	.	.	N	A	A	N	Y	V	N	V	S	N	P	E	Q	Y	I	E	M	V	T	S	P
Template Known Secondary structure												S			T	T	T		T	T	S									S	S												S			T	T						.	.	.	.	.	.	.	.		G	G	G	G	T	T		S		G	G	G							S	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	.	M	V	G	N
Query Conservation																																																																													.
Alig confidence											.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.																												.
Template Conservation											.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Sequence		N	N	P	E	G	L	L	R	H	.	.	.	.	.	.	.	.	.	.	A	V	I	K	G	C	K	S	I	Y	D	M	V	Y	Y	W	P	H	Y	T	P	.	.	.	.	.	.	.	.	I	K	Y	K	A	D	E	D	I	L	L	F	T	M	S	K	F	T	G	H	S	G	S	R	F	G	W	A	L	I	K	D
Template Known Secondary structure			T	T	T						.	.	.	.	.	.	.	.	.	.		S	S	T	T								T	T		S	T	T	T	S		.	.	.	.	.	.	.	.			S		B			S										T	S		G	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.											.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290												.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	.	.	.	.	.	.	.	.	.	.	.	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	A	G	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	V	Y	N	N	L	L	N	Y	M	T	K	N	T	E	G	T	P	R	E	T	Q	L	R	S	L	K	V	L	K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V	N	I	T	A	L	L	D	Q	S	D	R	F	S	Y	Q	E	L	P	Q	S
Template Known Secondary structure																T	S	S																								T	T	S	T	T	S																					T	T	S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
							319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	E	N	R	D	R	I	R	Q	A	I	R	G	I	K	A	M
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																				.	.	.	.	.																								.
Template Conservation																										.	.	.	.	.																								.
Template Sequence		E	Y	C	N	Y	F	R	R	M	R	P	P	S	P	S	Y	A	W	V	K	C	E	W	E	.	.	.	.	.	E	D	K	D	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	E	.	A	S	S	R	Y	V	R	L	S	L	I	K	T	Q	D	D	F	D	Q	L	M	Y	Y	L	K	D	M
Template Known Secondary structure					T	T	T	T								S								S	G	.	.	.	.	.	G	G		S								T	T						G	G	G	G	T	.	S		T	T							S	S
Template Predicted Secondary structure																										.	.	.	.	.																								.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		394	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	A
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		422	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions