73 d2hoxa1 Probab=100.00  E-value=0  Score=314.40  Aligned_columns=329  Identities=17%

Q ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC----CCCCC--CCCHHHHHHHHHHHHHHCCCCCCCHHCEEECCCCH
Q ss_conf             9973787557998337989999999998358424----68983--37989999999999887078997300189849806
Q batch____        35 GEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTH----GYSTS--RGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSK  108 (412)
Q Consensus        35 g~~~i~l~~g~p~~~~~~~v~~a~~~~~~~~~~~----~Y~~~--~G~~~lreaia~~l~~~~g~~~~~~~~i~~t~G~~  108 (412)
                      ...+++++.|+|.+..+-....+...++..+.+.    .|.+.  .+.++|++.|++.+... |..+.+.++|++|+|++
T Consensus        55 ~~~~~~~~~gdp~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~-g~~~~~~~~iv~t~G~~  133 (425)
T d2hoxa1          55 QGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV-GNAAAKDRYIVFGVGVT  133 (425)
T ss_dssp             TTCCEECCSCCCGGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHH-TCBCCTTCEEEEESHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEECCHH
T ss_conf             65543466788554636641142100011245554565456643445289999999998850-88678877699946889


Q ss_pred             HHHHHHHHHHCCCCCE--------EEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCCCCEEEECCCC
Q ss_conf             9999999851048979--------99848960899999997048148976077567774568898506898689972789
Q batch____       109 EGLAHLMLATLDHGDT--------VLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP  180 (412)
Q Consensus       109 ~~l~~~~~~~~~~gd~--------Viv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~p  180 (412)
                      ++|..++.+++++||.        |++..|+|..|...+...+..+..+++        +.+.+....++.+++++++||
T Consensus       134 ~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~~~~~~~i~~P  205 (425)
T d2hoxa1         134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG--------NAANYVNVSNPEQYIEMVTSP  205 (425)
T ss_dssp             HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEE--------EGGGGTTCSCGGGEEEEEESS
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCC--------CHHHHHHHCCCCCEEEEECCC
T ss_conf             999999998648886123567743573002377899999855997444247--------988999724888579998178


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCCCC-CCCC
Q ss_conf             986763156999999999998679489970333655468744586566367678459987653000010143211-3489
Q batch____       181 SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGF-MVGN  259 (412)
Q Consensus       181 ~NPtG~~~~~~~l~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~v~~~~s~SK~~~~~g~r~g~-~~~~  259 (412)
                      |||||.+++          |.+|++++|+||+|.++.+.+        .+...+++++++|+||.++++|+|+|| ++.+
T Consensus       206 ~NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~--------~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~  267 (425)
T d2hoxa1         206 NNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP--------IKYKADEDILLFTMSKFTGHSGSRFGWALIKD  267 (425)
T ss_dssp             CTTTCCCCC----------CSSTTCEEEEECTTCSTTTSC--------CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECC
T ss_pred             CCCCCEEEE----------EEECCCEEEEECCCCCCCCCC--------CCCCCCCEEEEEECCCCCCCCCCCEEEEEECC
T ss_conf             888560654----------232396899714323433233--------33456854999815510123323101899689


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----------CHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
Q ss_conf             9999887877653005867699999999861-----------1077899999999999999999998579----------
Q batch____       260 KTLVSALARIKSYHDYGTFTPLQVAAIAALE-----------GDQQCVRDIAEQYKRRRDVLVKGLHEAG----------  318 (412)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~l~~~g----------  318 (412)
                      +.+.+.+.........+++.+.|.++..++.           ..+.+++..++.++++++.+.+.|...+          
T Consensus       268 ~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~  347 (425)
T d2hoxa1         268 ESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQS  347 (425)
T ss_dssp             HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSC
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             89999999864105777368999999999602013456555548999999999999999999999863576300345655


Q ss_pred             -----CEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEECCHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             -----889646874089998666567999899999999857959981611187889779999049989999999999999
Q batch____       319 -----WMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAM  393 (412)
Q Consensus       319 -----~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~iRis~~~~~e~l~~~l~rL~~~  393 (412)
                           +....|.+++|+|++++..     +.+++.++++++||.++||+.|+ .+++|||||++.++|+++++++||+++
T Consensus       348 ~~~~~~~~~~~~~~~f~w~~~~~~-----~~~~~~~lL~e~GI~v~pGs~FG-~~~~~vRiSl~~~~e~ld~~l~rL~~~  421 (425)
T d2hoxa1         348 EYCNYFRRMRPPSPSYAWVKCEWE-----EDKDCYQTFQNGRINTQNGVGFE-ASSRYVRLSLIKTQDDFDQLMYYLKDM  421 (425)
T ss_dssp             EEETTTTEEECCCCSEEEEEECSG-----GGCSHHHHHHHTTEECEEGGGGT-SCTTEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCC-----CHHHHHHHHHHCCEEEECCCCCC-CCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             432210013778761699867898-----08999999996694997170238-988659999139989999999999998


Q ss_pred             HHH
Q ss_conf             995
Q batch____       394 FRA  396 (412)
Q Consensus       394 l~a  396 (412)
                      +++
T Consensus       422 v~~  424 (425)
T d2hoxa1         422 VKA  424 (425)
T ss_dssp             HTC
T ss_pred             HHC
T ss_conf             726