Job Description P0A853 Confidence 99.52% Date Thu Jan 5 11:06:55 GMT 2012 Rank 234 Aligned Residues 288 % Identity 15% Template d2hoxa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like Resolution 1.40

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.
Query Sequence		S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	.	.	.	.	.	.	.	.	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N
Query Conservation																			.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.																																								.
Template Conservation																																																																		.
Template Sequence		V	S	N	F	I	S	F	E	L	E	K	T	I	K	E	L	H	E	V	V	G	N	A	A	A	K	D	R	Y	I	V	F	G	V	G	V	T	Q	L	I	H	G	L	V	I	S	L	S	P	N	M	T	A	T	P	D	A	P	E	S	K	V	V	A	.	H	A	P	F	Y	P	V	F	R	E	Q	T	K	Y	F
Template Known Secondary structure				T	T																	T		B			T	T							S														S			T	T	T		T	T	S								.		S	S												S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.															.						.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.															.						.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	K	G	Y	V	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	A	A	N	Y	V	N	V	S	N	P	.	.	.	.	E	Q	Y	I	E	M	V	T	S	P	N	N	P	E	.	G	L	L	R	H	.	.	.	.	.	.	.	.	.	.	A	V	I	K	G	C	K	S	I	Y
Template Known Secondary structure				T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	G	T	T		S		G	.	.	.	.	G	G							S	S		T	T	T	.						.	.	.	.	.	.	.	.	.	.		S	S	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.															.						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.																	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.											.	.	.	.	.	220	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F
Query Conservation																																																				.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																						.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Sequence		D	M	V	Y	Y	W	P	H	Y	T	P	I	K	Y	K	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	I	L	L	F	T	M	S	K	F	T	G	H	S	G	S	R	F	G	W	A	L	I	K	D	E	S	V	Y	N	N	L	L	N	Y	M	T	K	.	.	.	.	.	.	.
Template Known Secondary structure				T	T		S	T	T	T	S				S		B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										T	S		G	G	G																							.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.																		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.														.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	Q	Q	A
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																					.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	N	T	E	G	T	P	R	E	T	Q	L	R	S	L	K	V	L	K	E	V	V	A	M	V	K	T	Q	K	G	T	M	R	D	L	N	T	F	G	F	K	K	L	R	E	R	W	V	N	I	T	A	L	L	D	Q	S	D	R	F	S	Y	Q	E	L	P	Q	S	E	Y	C	N	Y	F	R	R	M	R	P	P
Template Known Secondary structure		.		T	S	S																								T	T	S	T	T	S																					T	T	S	S	S								S					T	T	T	T
Template Predicted Secondary structure		.
Template SS confidence
			281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Sequence		S	P	S	Y	A	W	V	K	C	E	W	.	.	.	.	.	.	.	.	.	.	E	E	D	K	D	C	Y	Q	T	F	Q	N	G	R	I	N	T	Q	N	G	V	G	F	E	A	S	S	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	V	R	L	S	L	I	K	.	.	.	T	Q	D	D	F	D	Q	L
Template Known Secondary structure				S								S	.	.	.	.	.	.	.	.	.	.	G	G	G		S								T	T						G	G	G	G	T	S		T	T		.	.	.	.	.	.	.	.	.	.	.	.						S	S	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370											.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.													400	.	.	.	.	.	.				.	.	.	410	.	.	.	.
		436	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	F	K	H	V	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Y	Y	L	K	D	M	V	K
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions