234 d2hoxa1 Probab=99.52   E-value=1e-11  Score=87.91  Aligned_columns=288  Identities=15%

Q ss_pred             CCCCCHHHHHHHHHHHC--------CCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCCHHHHHC
Q ss_conf             57867899999999871--------9984997699789999999998513504223577607861566653210247755
Q batch____        75 SGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN  146 (471)
Q Consensus        75 g~d~t~~~Lee~~a~l~--------G~e~~l~~~SGt~A~~ia~~~~~~~g~~~~~~~~~~~~~~~~~h~~t~~a~a~~~  146 (471)
                      .+.++...|++.++++.        ...+++++++.+++..+++.+++++||.+......++++ ....+......+.+.
T Consensus        97 ~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~-~~p~y~~~~~~~~~~  175 (425)
T d2hoxa1          97 VSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVA-HAPFYPVFREQTKYF  175 (425)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEE-CSSCCHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEE-CCHHHHHHHHHHHHC
T ss_conf             4344528999999999885088678877699946889999999998648886123567743573-002377899999855


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             92588705654456544577767668999999875137224308999525477785227889999999999980998999
Q batch____       147 GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM  226 (471)
Q Consensus       147 G~~~~~i~~~~~~~~~~~~~~~g~id~~~l~~~i~~~~~~~~~~i~i~~~~n~~gG~~~~~~~l~~i~~la~~~g~~l~~  226 (471)
                      |.....+.                +|.+.+++++++    .+.+++++++||.. |++.+          |.+||++++.
T Consensus       176 ~~~~~~~~----------------~d~~~~~~~~~~----~~~~~~i~~P~NPt-G~v~~----------a~~~~~~~i~  224 (425)
T d2hoxa1         176 DKKGYVWA----------------GNAANYVNVSNP----EQYIEMVTSPNNPE-GLLRH----------AVIKGCKSIY  224 (425)
T ss_dssp             CCTTEEEE----------------EEGGGGTTCSCG----GGEEEEEESSCTTT-CCCCC----------CSSTTCEEEE
T ss_pred             CCCCCCCC----------------CCHHHHHHHCCC----CCEEEEECCCCCCC-CEEEE----------EEECCCEEEE
T ss_conf             99744424----------------798899972488----85799981788885-60654----------2323968997


Q ss_pred             ECHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC--EEEEEECCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             51154012321012336755676767555542017667874277888775--0699835335423444310233234664
Q batch____       227 DSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM--GGLLCMKDDSFFDVYTECRTLCVVQEGF  304 (471)
Q Consensus       227 D~Ar~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~D~~t~s~~K~~g~p~--gG~i~~~d~~~~~~~~~~~~~~~~~~g~  304 (471)
                      |.+-..-...-......                 .+++..|.+|.++.++  .|++...++.+.......+..       
T Consensus       225 De~y~~~~~~~~~~~~~-----------------~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~-------  280 (425)
T d2hoxa1         225 DMVYYWPHYTPIKYKAD-----------------EDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK-------  280 (425)
T ss_dssp             ECTTCSTTTSCCCSCBC-----------------CSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH-------
T ss_pred             ECCCCCCCCCCCCCCCC-----------------CEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHC-------
T ss_conf             14323433233334568-----------------549998155101233231018996898999999986410-------


Q ss_pred             CCCCCCCHHHHHHHHHHHHHH-------------CCHHHHHHHHHHHHHHHHHHHHCCC----------------CCCCC
Q ss_conf             544654426899988658874-------------0288999999999999997886288----------------11146
Q batch____       305 PTYGGLEGGAMERLAVGLYDG-------------MNLDWLAYRIAQVQYLVDGLEEIGV----------------VCQQA  355 (471)
Q Consensus       305 ~~~gg~~~~~~~a~a~gl~~~-------------~~~~~l~~~~~~~~~l~~~L~~~g~----------------~v~~~  355 (471)
                       ..-+.+.-...++...|+..             ......+.-.+.-+.|.+.|.+.+.                .+.+.
T Consensus       281 -~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~  359 (425)
T d2hoxa1         281 -NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPP  359 (425)
T ss_dssp             -HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECC
T ss_pred             -CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -5777368999999999602013456555548999999999999999999999863576300345655432210013778


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             87278873100134222233303577788754318131001455302466676434454775898527666889999999
Q batch____       356 GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFI  435 (471)
Q Consensus       356 ggh~v~vd~~~~~p~~~~~~~~~~~~~~~l~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~iP~~~~t~eelD~~  435 (471)
                      ++.++.++...          +...++..+..+.||.+..-..+-.+-+.            +||++-.   |+|++|.+
T Consensus       360 ~~~f~w~~~~~----------~~~~~~~~lL~e~GI~v~pGs~FG~~~~~------------vRiSl~~---~~e~ld~~  414 (425)
T d2hoxa1         360 SPSYAWVKCEW----------EEDKDCYQTFQNGRINTQNGVGFEASSRY------------VRLSLIK---TQDDFDQL  414 (425)
T ss_dssp             CCSEEEEEECS----------GGGCSHHHHHHHTTEECEEGGGGTSCTTE------------EEEECSS---CHHHHHHH
T ss_pred             CCCEEEEECCC----------CCHHHHHHHHHHCCEEEECCCCCCCCCCE------------EEEEECC---CHHHHHHH
T ss_conf             76169986789----------80899999999669499717023898865------------9999139---98999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999998
Q batch____       436 IEAFKHVKE  444 (471)
Q Consensus       436 ~~al~~i~~  444 (471)
                      ++.|+++++
T Consensus       415 l~rL~~~v~  423 (425)
T d2hoxa1         415 MYYLKDMVK  423 (425)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
T ss_conf             999999872