Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP60932
DateThu Jan 5 12:07:15 GMT 2012
Unique Job ID2df452a0fc801569

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1vhra_
Top template information
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
Confidence and coverage
Confidence: 86.9% Coverage: 9%
25 residues ( 9% of your sequence) have been modelled with 86.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTAKTFEVVIQLGSILAV
Secondary structure 







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Disorder  ???
























































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   .........70.........80.........90.........100.........110.........120
Sequence  VVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPAVVLGLLFHDTIKSLFNPI
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   .........130.........140.........150.........160.........170.........180
Sequence  NVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMIGCFQCLALWPGFSRSGATIS
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??????????

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   .........190.........200.........210.........220.........230.........240
Sequence  GGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGFLTSGDIPMFAVGFITAFVVALI
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??



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   .........250.........260.........270...
Sequence  AIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF
Secondary structure 



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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1vhr chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 86.9%
Identity: 20%
Fold: (Phosphotyrosine protein) phosphatases II
Superfamily: (Phosphotyrosine protein) phosphatases II
Family: Dual specificity phosphatase-like

Phyre2

PDB 2y96 chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 86.7%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase dupd1;
PDBTitle: structure of human dual-specificity phosphatase 27

Phyre2

PDB 2r0b chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 84.0%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein;
PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein

Phyre2

PDB 2esb chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 83.5%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 18;
PDBTitle: crystal structure of human dusp18

Phyre2

PDB 1wrm chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 83.3%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase 22;
PDBTitle: crystal structure of jsp-1

Phyre2

PDB 2img chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 83.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 23;
PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion

Phyre2

PDB 1xri chain A

3D model

Region: 171 - 194
Aligned: 23
Modelled: 24
Confidence: 81.2%
Identity: 22%
Fold: (Phosphotyrosine protein) phosphatases II
Superfamily: (Phosphotyrosine protein) phosphatases II
Family: Dual specificity phosphatase-like

Phyre2

PDB 3emu chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 81.1%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain
PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica

Phyre2

PDB 2gwo chain C

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 80.8%
Identity: 20%
PDB header:hydrolase
Chain: C: PDB Molecule:dual specificity protein phosphatase 13;
PDBTitle: crystal structure of tmdp

Phyre2

PDB 2g6z chain B

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 80.5%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:dual specificity protein phosphatase 5;
PDBTitle: crystal structure of human dusp5

Phyre2

PDB 1m3g chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 80.2%
Identity: 28%
Fold: (Phosphotyrosine protein) phosphatases II
Superfamily: (Phosphotyrosine protein) phosphatases II
Family: Dual specificity phosphatase-like

Phyre2

PDB 1zzw chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 79.9%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 10;
PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5

Phyre2

PDB 3rgq chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 79.8%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1;
PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p

Phyre2

PDB 3nme chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 23
Confidence: 79.4%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:sex4 glucan phosphatase;
PDBTitle: structure of a plant phosphatase

Phyre2

PDB 2oud chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 78.5%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 10;
PDBTitle: crystal structure of the catalytic domain of human mkp5

Phyre2

PDB 2nt2 chain C

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 78.2%
Identity: 28%
PDB header:hydrolase
Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2;
PDBTitle: crystal structure of slingshot phosphatase 2

Phyre2

PDB 1fpz chain F

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 77.9%
Identity: 24%
PDB header:hydrolase
Chain: F: PDB Molecule:cyclin-dependent kinase inhibitor 3;
PDBTitle: crystal structure analysis of kinase associated phosphatase2 (kap) with a substitution of the catalytic site cysteine3 (cys140) to a serine

Phyre2

PDB 1yz4 chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 77.4%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a;
PDBTitle: crystal structure of dusp15

Phyre2

PDB 2e0t chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 77.2%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase 26;
PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens

Phyre2

PDB 1mkp chain A

3D model

Region: 171 - 195
Aligned: 25
Modelled: 25
Confidence: 77.0%
Identity: 24%
Fold: (Phosphotyrosine protein) phosphatases II
Superfamily: (Phosphotyrosine protein) phosphatases II
Family: Dual specificity phosphatase-like

Phyre2
1

d1vhra_
2

c2y96A_
3

c2r0bA_
4

c2esbA_
5

c1wrmA_
6

c2imgA_
7

d1xria_
8

c3emuA_
9

c2gwoC_
10

c2g6zB_
11

d1m3ga_
12

c1zzwA_
13

c3rgqA_
14

c3nmeA_
15

c2oudA_
16

c2nt2C_
17

c1fpzF_
18

c1yz4A_
19

c2e0tA_
20

d1mkpa_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



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44



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46



47



48



49



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52



53



54



55



56



57



58



59



60



61



62






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vhra_



86.9 20 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
2c2y96A_



86.7 20 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase dupd1;
PDBTitle: structure of human dual-specificity phosphatase 27
3c2r0bA_



84.0 28 PDB header:hydrolase
Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein;
PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein
4c2esbA_



83.5 28 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 18;
PDBTitle: crystal structure of human dusp18
5c1wrmA_



83.3 20 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase 22;
PDBTitle: crystal structure of jsp-1
6c2imgA_



83.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 23;
PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion
7d1xria_



81.2 22 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
8c3emuA_



81.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain
PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica
9c2gwoC_



80.8 20 PDB header:hydrolase
Chain: C: PDB Molecule:dual specificity protein phosphatase 13;
PDBTitle: crystal structure of tmdp
10c2g6zB_



80.5 20 PDB header:hydrolase
Chain: B: PDB Molecule:dual specificity protein phosphatase 5;
PDBTitle: crystal structure of human dusp5
11d1m3ga_



80.2 28 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
12c1zzwA_



79.9 24 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 10;
PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5
13c3rgqA_



79.8 28 PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1;
PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p
14c3nmeA_



79.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:sex4 glucan phosphatase;
PDBTitle: structure of a plant phosphatase
15c2oudA_



78.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 10;
PDBTitle: crystal structure of the catalytic domain of human mkp5
16c2nt2C_



78.2 28 PDB header:hydrolase
Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2;
PDBTitle: crystal structure of slingshot phosphatase 2
17c1fpzF_



77.9 24 PDB header:hydrolase
Chain: F: PDB Molecule:cyclin-dependent kinase inhibitor 3;
PDBTitle: crystal structure analysis of kinase associated phosphatase2 (kap) with a substitution of the catalytic site cysteine3 (cys140) to a serine
18c1yz4A_



77.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a;
PDBTitle: crystal structure of dusp15
19c2e0tA_



77.2 20 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase 26;
PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens
20d1mkpa_



77.0 24 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
21c2wgpA_



not modelled 76.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 14;
PDBTitle: crystal structure of human dual specificity phosphatase 14
22d1i9sa_



not modelled 75.5 36 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
23d1ohea2



not modelled 75.4 16 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
24c2hcmA_



not modelled 75.3 32 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase;
PDBTitle: crystal structure of mouse putative dual specificity phosphatase2 complexed with zinc tungstate, new york structural genomics3 consortium
25c1yn9B_



not modelled 74.9 20 PDB header:hydrolase
Chain: B: PDB Molecule:polynucleotide 5'-phosphatase;
PDBTitle: crystal structure of baculovirus rna 5'-phosphatase2 complexed with phosphate
26c2j17A_



not modelled 72.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase yil113w;
PDBTitle: ptyr bound form of sdp-1
27d1rxda_



not modelled 69.8 20 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
28d1v3aa_



not modelled 68.6 20 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
29c2c46B_



not modelled 68.3 36 PDB header:transferase
Chain: B: PDB Molecule:mrna capping enzyme;
PDBTitle: crystal structure of the human rna guanylyltransferase and2 5'-phosphatase
30c2i6oA_



not modelled 67.9 24 PDB header:hydrolase
Chain: A: PDB Molecule:sulfolobus solfataricus protein tyrosine
PDBTitle: crystal structure of the complex of the archaeal sulfolobus2 ptp-fold phosphatase with phosphopeptides n-g-(p)y-k-n
31d1fpza_



not modelled 65.4 28 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
32c3rz2B_



not modelled 65.1 20 PDB header:hydrolase
Chain: B: PDB Molecule:protein tyrosine phosphatase type iva 1;
PDBTitle: crystal of prl-1 complexed with peptide
33c3s4oB_



not modelled 64.5 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein tyrosine phosphatase-like protein;
PDBTitle: protein tyrosine phosphatase (putative) from leishmania major
34d1d5ra2



not modelled 46.1 32 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
35c2p4dA_



not modelled 45.6 32 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase;
PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors
36d1vdda_



not modelled 30.2 18 Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
37d1texa_



not modelled 24.8 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
38d1kcfa1



not modelled 24.5 40 Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
39c1vddC_



not modelled 20.1 17 PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
40c1oheA_



not modelled 19.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
41c3ap3A_



not modelled 18.2 50 PDB header:transferase
Chain: A: PDB Molecule:protein-tyrosine sulfotransferase 2;
PDBTitle: crystal structure of human tyrosylprotein sulfotransferase-2 complexed2 with pap
42c1b9qA_



not modelled 12.2 80 PDB header:collagen facit xiv
Chain: A: PDB Molecule:protein (collagen alpha 1);
PDBTitle: nmr structure of heparin binding site of non collagenous2 domain i (nc1) of collagen facit xiv
43c1b9pA_



not modelled 12.2 80 PDB header:collagen facit xiv
Chain: A: PDB Molecule:protein (collagen alpha 1);
PDBTitle: nmr structure of heparin binding site of non collagenous2 domain i (nc1) of collagen facit xiv
44c2zq5A_



not modelled 11.5 36 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of sulfotransferase stf1 from2 mycobacterium tuberculosis h37rv (type1 form)
45c2ksdA_



not modelled 10.9 12 PDB header:transferase
Chain: A: PDB Molecule:aerobic respiration control sensor protein arcb;
PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor arcb, center for structures of3 membrane proteins (csmp) target 4310c
46c3u4gA_



not modelled 10.4 50 PDB header:transferase
Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase;
PDBTitle: the structure of cobt from pyrococcus horikoshii
47c2z6vA_



not modelled 9.1 36 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of sulfotransferase stf9 from2 mycobacterium avium
48c2jp3A_



not modelled 9.0 20 PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
49c2f46A_



not modelled 7.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative phosphatase (nma1982) from neisseria2 meningitidis z2491 at 1.41 a resolution
50c1vkjA_



not modelled 7.2 24 PDB header:transferase
Chain: A: PDB Molecule:heparan sulfate (glucosamine) 3-o-
PDBTitle: crystal structure of heparan sulfate 3-o-sulfotransferase2 isoform 1 in the presence of pap
51d1vkja_



not modelled 7.2 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
52c3awfC_



not modelled 6.8 32 PDB header:hydrolase, membrane protein
Chain: C: PDB Molecule:voltage-sensor containing phosphatase;
PDBTitle: crystal structure of pten-like domain of ci-vsp (236-576)
53c3rnlA_



not modelled 6.2 21 PDB header:transferase
Chain: A: PDB Molecule:sulfotransferase;
PDBTitle: crystal structure of sulfotransferase from alicyclobacillus2 acidocaldarius
54c3majA_



not modelled 6.1 22 PDB header:dna binding protein
Chain: A: PDB Molecule:dna processing chain a;
PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009
55d1cuka1



not modelled 5.7 18 Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
56c2pqnB_



not modelled 5.6 25 PDB header:apoptosis
Chain: B: PDB Molecule:mitochondrial division protein 1;
PDBTitle: crystal structure of yeast fis1 complexed with a fragment of yeast2 mdv1
57d1jb0k_



not modelled 5.5 39 Fold:Photosystem I reaction center subunit X, PsaK
Superfamily:Photosystem I reaction center subunit X, PsaK
Family:Photosystem I reaction center subunit X, PsaK
58c1jb0K_



not modelled 5.5 39 PDB header:photosynthesis
Chain: K: PDB Molecule:photosystem 1 reaction centre subunit x;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
59d1sdia_



not modelled 5.5 22 Fold:YcfC-like
Superfamily:YcfC-like
Family:YcfC-like
60c3bd9A_



not modelled 5.3 24 PDB header:transferase
Chain: A: PDB Molecule:heparan sulfate glucosamine 3-o-sulfotransferase
PDBTitle: human 3-o-sulfotransferase isoform 5 with bound pap
61c1q90G_



not modelled 5.2 31 PDB header:photosynthesis
Chain: G: PDB Molecule:cytochrome b6f complex subunit petg;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
62d1q90g_



not modelled 5.2 31 Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0