Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	T	S	P	V	R	M	D	D	L	P	L	N	R	F	H	C	R	I	A	A	L	T	F	G	A	H	L	T	D	G	Y	V	L	G	V	I	G	Y	A	I	I	Q	L	T	P	A	M	Q	L	T	P	F	M	A	G	M	I	G
Secondary structure
SS confidence
Disorder		?	?	?									?																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	S	A	L	L	G	L	F	L	G	S	L	V	L	G	W	I	S	D	H	I	G	R	Q	K	I	F	T	F	S	F	L	L	I	T	L	A	S	F	L	Q	F	F	A	T	T	P	E	H	L	I	G	L	R	I	L	I	G	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	G	G	D	Y	S	V	G	H	T	L	L	A	E	F	S	P	R	R	H	R	G	I	L	L	G	A	F	S	V	V	W	T	V	G	Y	V	L	A	S	I	A	G	H	H	F	I	S	E	N	P	E	A	W	R	W	L	L	A	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	A	L	P	A	L	L	I	T	L	L	R	W	G	T	P	E	S	P	R	W	L	L	R	Q	G	R	F	A	E	A	H	A	I	V	H	R	Y	F	G	P	H	V	L	L	G	D	E	V	V	T	A	T	H	K	H	I	K	T	L
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	S	S	R	Y	W	R	R	T	A	F	N	S	V	F	F	V	C	L	V	I	P	W	F	V	I	Y	T	W	L	P	T	I	A	Q	T	I	G	L	E	D	A	L	T	A	S	L	M	L	N	A	L	L	I	V	G	A	L	L	G
Secondary structure
SS confidence
Disorder																																						?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	V	L	T	H	L	L	A	H	R	K	F	L	L	G	S	F	L	L	L	A	A	T	L	V	V	M	A	C	L	P	S	G	S	S	L	T	L	L	L	F	V	L	F	S	T	T	I	S	A	V	S	N	L	V	G	I	L	P	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		E	S	F	P	T	D	I	R	S	L	G	V	G	F	A	T	A	M	S	R	L	G	A	A	V	S	T	G	L	L	P	W	V	L	A	Q	W	G	M	Q	V	T	L	L	L	L	A	T	V	L	L	V	G	F	V	V	T	W	L	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Sequence		A	P	E	T	K	A	L	P	L	V	A	A	G	N	V	G	G	A	N	E	H	S	V	S	V
Secondary structure
SS confidence
Disorder															?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pw4 chain A Region: 2 - 435 Aligned: 416 Modelled: 417 Confidence: 100.0% Identity: 12% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 1pv7 chain A Region: 13 - 438 Aligned: 415 Modelled: 415 Confidence: 100.0% Identity: 10% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 3o7p chain A Region: 23 - 424 Aligned: 400 Modelled: 402 Confidence: 100.0% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Phyre2 PDB 2gfp chain A Region: 20 - 413 Aligned: 367 Modelled: 368 Confidence: 99.9% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Phyre2 PDB 2xut chain C Region: 22 - 417 Aligned: 396 Modelled: 396 Confidence: 99.9% Identity: 13% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Phyre2 PDB 3b9y chain A Region: 6 - 241 Aligned: 228 Modelled: 236 Confidence: 70.4% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Phyre2 PDB 3hd6 chain A Region: 232 - 444 Aligned: 213 Modelled: 213 Confidence: 60.8% Identity: 9% PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Phyre2 PDB 3qnq chain D Region: 387 - 440 Aligned: 54 Modelled: 54 Confidence: 52.8% Identity: 13% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 3pvp chain A Region: 416 - 444 Aligned: 29 Modelled: 29 Confidence: 27.3% Identity: 21% PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna Phyre2 PDB 1fs1 chain B domain 1 Region: 425 - 437 Aligned: 13 Modelled: 13 Confidence: 26.9% Identity: 8% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 1fs2 chain B domain 1 Region: 425 - 437 Aligned: 13 Modelled: 13 Confidence: 21.1% Identity: 8% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 3ff5 chain B Region: 423 - 439 Aligned: 17 Modelled: 17 Confidence: 19.9% Identity: 12% PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p Phyre2 PDB 2jln chain A Region: 383 - 443 Aligned: 60 Modelled: 61 Confidence: 18.0% Identity: 10% PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Phyre2 PDB 3c9p chain A Region: 423 - 435 Aligned: 13 Modelled: 13 Confidence: 17.3% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 Phyre2 PDB 1j1v chain A Region: 416 - 442 Aligned: 27 Modelled: 24 Confidence: 16.8% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: TrpR-like Family: Chromosomal replication initiation factor DnaA C-terminal domain IV Phyre2 PDB 1nex chain A domain 1 Region: 425 - 437 Aligned: 13 Modelled: 13 Confidence: 16.2% Identity: 0% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 2g9p chain A Region: 73 - 86 Aligned: 14 Modelled: 14 Confidence: 15.0% Identity: 29% PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom Phyre2 PDB 2ovr chain A domain 1 Region: 425 - 437 Aligned: 13 Modelled: 13 Confidence: 14.5% Identity: 8% Fold: Skp1 dimerisation domain-like Superfamily: Skp1 dimerisation domain-like Family: Skp1 dimerisation domain-like Phyre2 PDB 2w85 chain A Region: 423 - 442 Aligned: 20 Modelled: 20 Confidence: 13.0% Identity: 10% PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 Phyre2 PDB 3hkz chain Y Region: 426 - 444 Aligned: 19 Modelled: 19 Confidence: 13.0% Identity: 16% PDB header:transferase Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea Phyre2 1 d1pw4a_ 2 d1pv7a_ 3 c3o7pA_ 4 c2gfpA_ 5 c2xutC_ 6 c3b9yA_ 7 c3hd6A_ 8 c3qnqD_ 9 c3pvpA_ 10 d1fs1b1 11 d1fs2b1 12 c3ff5B_ 13 c2jlnA_ 14 c3c9pA_ 15 d1j1va_ 16 d1nexa1 17 c2g9pA_ 18 d2ovra1 19 c2w85A_ 20 c3hkzY_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pw4a_ 100.0 12 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 2 d1pv7a_ 100.0 10 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 3 c3o7pA_ 100.0 15 PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) 4 c2gfpA_ 99.9 16 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 5 c2xutC_ 99.9 13 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 6 c3b9yA_ 70.4 10 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 7 c3hd6A_ 60.8 9 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 8 c3qnqD_ 52.8 13 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 9 c3pvpA_ 27.3 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 10 d1fs1b1 26.9 8 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 11 d1fs2b1 21.1 8 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 12 c3ff5B_ 19.9 12 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 13 c2jlnA_ 18.0 10 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 14 c3c9pA_ 17.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 15 d1j1va_ 16.8 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 16 d1nexa1 16.2 0 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 17 c2g9pA_ 15.0 29 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 18 d2ovra1 14.5 8 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 19 c2w85A_ 13.0 10 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 20 c3hkzY_ 13.0 16 PDB header:transferase Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea 21 c2p1nD_ not modelled 12.9 15 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 22 d1l8qa1 not modelled 12.9 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 23 c2f9jP_ not modelled 11.8 13 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 24 d1xwya1 not modelled 9.2 7 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:TatD Mg-dependent DNase-like 25 d1xpja_ not modelled 8.9 11 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 26 c3hkzZ_ not modelled 8.9 16 PDB header:transferase Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13; PDBTitle: the x-ray crystal structure of rna polymerase from archaea 27 d1ymga1 not modelled 8.5 2 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 28 c1ymgA_ not modelled 8.5 2 PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution 29 c3mmyF_ not modelled 8.4 14 PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 30 c3m91B_ not modelled 8.2 25 PDB header:hydrolase regulator Chain: B: PDB Molecule:prokaryotic ubiquitin-like protein pup; PDBTitle: crystal structure of the prokaryotic ubiquitin-like protein (pup)2 complexed with the amino terminal coiled coil of the mycobacterium3 tuberculosis proteasomal atpase mpa 31 d1xeqa1 not modelled 8.2 40 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:N-terminal, RNA-binding domain of nonstructural protein NS1 32 c2vpzG_ not modelled 7.9 19 PDB header:oxidoreductase Chain: G: PDB Molecule:hypothetical membrane spanning protein; PDBTitle: polysulfide reductase native structure 33 c2y0sJ_ not modelled 7.7 11 PDB header:transferase Chain: J: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group 34 c2y0sQ_ not modelled 7.7 11 PDB header:transferase Chain: Q: PDB Molecule:rna polymerase subunit 13; PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in2 p21 space group 35 c3r66A_ not modelled 7.7 40 PDB header:viral protein/antiviral protein Chain: A: PDB Molecule:non-structural protein 1; PDBTitle: crystal structure of human isg15 in complex with ns1 n-terminal region2 from influenza virus b, northeast structural genomics consortium3 target ids hx6481, hr2873, and or2 36 d2a1la1 not modelled 7.6 7 Fold:TBP-like Superfamily:Bet v1-like Family:Phoshatidylinositol transfer protein, PITP 37 d1rsob_ not modelled 7.5 13 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 38 c3m9dI_ not modelled 7.2 20 PDB header:chaperone Chain: I: PDB Molecule:prokaryotic ubiquitin-like protein pup; PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain 39 c1egpA_ not modelled 7.1 20 PDB header:proteinase inhibitor Chain: A: PDB Molecule:eglin-c; PDBTitle: proteinase inhibitor eglin c with hydrolysed reactive center 40 c2l16A_ not modelled 7.1 11 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 41 c2waqQ_ not modelled 7.0 11 PDB header:transcription Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 42 c2rddB_ not modelled 6.8 6 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 43 d1f15a_ not modelled 6.7 17 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Bromoviridae-like VP 44 d2p7vb1 not modelled 6.7 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 45 c1cirA_ not modelled 6.7 17 PDB header:serine protease inhibitor Chain: A: PDB Molecule:chymotrypsin inhibitor 2; PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)] 46 d1j4na_ not modelled 6.6 6 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 47 d1t27a_ not modelled 6.6 7 Fold:TBP-like Superfamily:Bet v1-like Family:Phoshatidylinositol transfer protein, PITP 48 d1ofcx1 not modelled 6.6 0 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 49 c2diiA_ not modelled 6.6 5 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 50 c1nexC_ not modelled 6.5 0 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 51 d1xjsa_ not modelled 6.5 7 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 52 c1dgrW_ not modelled 6.5 6 PDB header:plant protein Chain: W: PDB Molecule:canavalin; PDBTitle: refined crystal structure of canavalin from jack bean 53 d2j85a1 not modelled 6.4 15 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 54 c3gg7A_ not modelled 6.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized metalloprotein; PDBTitle: crystal structure of an uncharacterized metalloprotein from2 deinococcus radiodurans 55 d2ppxa1 not modelled 6.4 4 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 56 c2ppxA_ not modelled 6.4 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens 57 c2kz6A_ not modelled 6.3 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2 58 d2ocda1 not modelled 6.3 5 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 59 d1jmxa1 not modelled 6.2 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 60 d2diia1 not modelled 6.2 5 Fold:BSD domain-like Superfamily:BSD domain-like Family:BSD domain 61 d1j6oa_ not modelled 6.1 7 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:TatD Mg-dependent DNase-like 62 c3h00A_ not modelled 6.1 20 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein gp160; PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp412 fusion intermediate 63 c2kdcC_ not modelled 5.8 11 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles 64 c2wb1Q_ not modelled 5.6 11 PDB header:transcription Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 65 c3bs3A_ not modelled 5.6 17 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 66 d1agxa_ not modelled 5.6 20 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 67 d1pbya1 not modelled 5.5 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 68 c3rkoK_ not modelled 5.4 14 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 69 c2wwbA_ not modelled 5.4 11 PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 70 c2ci2I_ not modelled 5.3 17 PDB header:proteinase inhibitor (chymotrypsin) Chain: I: PDB Molecule:chymotrypsin inhibitor 2; PDBTitle: crystal and molecular structure of the serine proteinase2 inhibitor ci-2 from barley seeds 71 d1vola2 not modelled 5.2 6 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 72 c2wb1J_ not modelled 5.2 11 PDB header:transcription Chain: J: PDB Molecule:dna-directed rna polymerase rpo13 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 73 d1zzma1 not modelled 5.2 11 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:TatD Mg-dependent DNase-like 74 d1to2i_ not modelled 5.1 17 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 75 d1csei_ not modelled 5.1 17 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors 76 d1ypci_ not modelled 5.1 21 Fold:CI-2 family of serine protease inhibitors Superfamily:CI-2 family of serine protease inhibitors Family:CI-2 family of serine protease inhibitors

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0