Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP11989
DateThu Jan 5 11:33:03 GMT 2012
Unique Job ID2d9145ca636e88c2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1h99A_
Top template information
PDB header:transcriptional antiterminator
Chain: A: PDB Molecule:transcription antiterminator lict;
PDBTitle: prd of lict antiterminator from bacillus subtilis
Confidence and coverage
Confidence:100.0% Coverage: 79%
219 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
272 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKRAGERINSSGIEKEYALSSHELNGR
Secondary structure 
SS confidence 
Disorder  ??
?????
?
?
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LSELLSHIPLEVMATCDRIISLAQERLGKLQDSIYISLTDHCQFAIKRFQQNVLLPNPLL
Secondary structure 
SS confidence 
Disorder 
??
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  WDIQRLYPKEFQLGEEALTIIDKRLGVQLPKDEVGFIAMHLVSAQMSGNMEDVAGVTQLM
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  REMLQLIKFQFSLNYQEESLSYQRLVTHLKFLSWRILEHASINDSDESLQQAVKQNYPQA
Secondary structure 
SS confidence 
Disorder 
?
???????
Disorder confidence 
 
   .........250.........260.........270........
Sequence  WQCAERIAIFIGLQYQRKISPAEIMFLAINIERVRKEH
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1h99 chain A

3D model

Region: 56 - 276
Aligned: 219
Modelled: 221
Confidence: 100.0%
Identity: 42%
PDB header:transcriptional antiterminator
Chain: A: PDB Molecule:transcription antiterminator lict;
PDBTitle: prd of lict antiterminator from bacillus subtilis

Phyre2

PDB 1h99 chain A domain 2

3D model

Region: 170 - 276
Aligned: 104
Modelled: 107
Confidence: 99.8%
Identity: 38%
Fold: PTS-regulatory domain, PRD
Superfamily: PTS-regulatory domain, PRD
Family: PTS-regulatory domain, PRD

Phyre2

PDB 3gwh chain B

3D model

Region: 175 - 276
Aligned: 99
Modelled: 102
Confidence: 99.8%
Identity: 23%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional antiterminator (bglg family);
PDBTitle: crystallographic ab initio protein solution far below atomic2 resolution

Phyre2

PDB 1h99 chain A domain 1

3D model

Region: 59 - 168
Aligned: 110
Modelled: 110
Confidence: 99.8%
Identity: 49%
Fold: PTS-regulatory domain, PRD
Superfamily: PTS-regulatory domain, PRD
Family: PTS-regulatory domain, PRD

Phyre2

PDB 3sqn chain B

3D model

Region: 68 - 278
Aligned: 204
Modelled: 211
Confidence: 99.7%
Identity: 12%
PDB header:transcription regulator
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis

Phyre2

PDB 1l1c chain A

3D model

Region: 3 - 56
Aligned: 54
Modelled: 54
Confidence: 99.6%
Identity: 44%
Fold: GroES-like
Superfamily: SacY-like RNA-binding domain
Family: BglG-like antiterminator proteins

Phyre2

PDB 1auu chain A

3D model

Region: 3 - 57
Aligned: 54
Modelled: 55
Confidence: 99.6%
Identity: 39%
Fold: GroES-like
Superfamily: SacY-like RNA-binding domain
Family: BglG-like antiterminator proteins

Phyre2

PDB 3nuf chain B

3D model

Region: 66 - 167
Aligned: 97
Modelled: 102
Confidence: 97.2%
Identity: 22%
PDB header:transcription regulator
Chain: B: PDB Molecule:prd-containing transcription regulator;
PDBTitle: crystal structure of a prd-containing transcription regulator2 (lsei_2718) from lactobacillus casei atcc 334 at 1.38 a resolution

Phyre2

PDB 2kci chain A

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 35.2%
Identity: 5%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative acyl carrier protein;
PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141

Phyre2

PDB 3lmo chain A

3D model

Region: 134 - 155
Aligned: 22
Modelled: 22
Confidence: 33.0%
Identity: 27%
PDB header:transferase
Chain: A: PDB Molecule:specialized acyl carrier protein;
PDBTitle: crystal structure of specialized acyl carrier protein2 (rpa2022) from rhodopseudomonas palustris, northeast3 structural genomics consortium target rpr324

Phyre2

PDB 2jq4 chain A domain 1

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 30.0%
Identity: 10%
Fold: Acyl carrier protein-like
Superfamily: ACP-like
Family: Acyl-carrier protein (ACP)

Phyre2

PDB 2jq4 chain A

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 30.0%
Identity: 10%
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein atu2571;
PDBTitle: complete resonance assignments and solution structure2 calculation of atc2521 (nesg id: att6) from agrobacterium3 tumefaciens

Phyre2

PDB 1f80 chain D

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 27.9%
Identity: 5%
Fold: Acyl carrier protein-like
Superfamily: ACP-like
Family: Acyl-carrier protein (ACP)

Phyre2

PDB 2qnw chain A

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 25.5%
Identity: 24%
PDB header:signaling protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein

Phyre2

PDB 2l4b chain A

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 25.4%
Identity: 5%
PDB header:transferase
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a

Phyre2

PDB 2fvf chain A

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 23.9%
Identity: 14%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: structure of 10:0-acp (protein with docked fatty acid)

Phyre2

PDB 3ce7 chain A

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 23.3%
Identity: 14%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:specific mitochodrial acyl carrier protein;
PDBTitle: crystal structure of toxoplasma specific mitochodrial acyl2 carrier protein, 59.m03510

Phyre2

PDB 1x3o chain A

3D model

Region: 134 - 154
Aligned: 21
Modelled: 21
Confidence: 23.0%
Identity: 14%
PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of the acyl carrier protein from thermus2 thermophilus hb8

Phyre2

PDB 2eht chain A

3D model

Region: 133 - 154
Aligned: 22
Modelled: 22
Confidence: 22.4%
Identity: 14%
PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of acyl carrier protein from aquifex aeolicus (form2 2)

Phyre2

PDB 3d9w chain A

3D model

Region: 135 - 158
Aligned: 24
Modelled: 24
Confidence: 21.5%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:putative acetyltransferase;
PDBTitle: crystal structure analysis of nocardia farcinica arylamine2 n-acetyltransferase

Phyre2
1
c1h99A_
2
d1h99a2
3
c3gwhB_
4
d1h99a1
5
c3sqnB_
6
d1l1ca_
7
d1auua_
8
c3nufB_
9
c2kciA_
10
c3lmoA_
11
d2jq4a1
12
c2jq4A_
13
d1f80d_
14
c2qnwA_
15
c2l4bA_
16
c2fvfA_
17
c3ce7A_
18
c1x3oA_
19
c2ehtA_
20
c3d9wA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
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99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1h99A_
100.0 42 PDB header:transcriptional antiterminator
Chain: A: PDB Molecule:transcription antiterminator lict;
PDBTitle: prd of lict antiterminator from bacillus subtilis
2d1h99a2
99.8 38 Fold:PTS-regulatory domain, PRD
Superfamily:PTS-regulatory domain, PRD
Family:PTS-regulatory domain, PRD
3c3gwhB_
99.8 23 PDB header:transcription
Chain: B: PDB Molecule:transcriptional antiterminator (bglg family);
PDBTitle: crystallographic ab initio protein solution far below atomic2 resolution
4d1h99a1
99.8 49 Fold:PTS-regulatory domain, PRD
Superfamily:PTS-regulatory domain, PRD
Family:PTS-regulatory domain, PRD
5c3sqnB_
99.7 12 PDB header:transcription regulator
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis
6d1l1ca_
99.6 44 Fold:GroES-like
Superfamily:SacY-like RNA-binding domain
Family:BglG-like antiterminator proteins
7d1auua_
99.6 39 Fold:GroES-like
Superfamily:SacY-like RNA-binding domain
Family:BglG-like antiterminator proteins
8c3nufB_
97.2 22 PDB header:transcription regulator
Chain: B: PDB Molecule:prd-containing transcription regulator;
PDBTitle: crystal structure of a prd-containing transcription regulator2 (lsei_2718) from lactobacillus casei atcc 334 at 1.38 a resolution
9c2kciA_
35.2 5 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative acyl carrier protein;
PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141
10c3lmoA_
33.0 27 PDB header:transferase
Chain: A: PDB Molecule:specialized acyl carrier protein;
PDBTitle: crystal structure of specialized acyl carrier protein2 (rpa2022) from rhodopseudomonas palustris, northeast3 structural genomics consortium target rpr324
11d2jq4a1
30.0 10 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
12c2jq4A_
30.0 10 PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein atu2571;
PDBTitle: complete resonance assignments and solution structure2 calculation of atc2521 (nesg id: att6) from agrobacterium3 tumefaciens
13d1f80d_
27.9 5 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
14c2qnwA_
25.5 24 PDB header:signaling protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein
15c2l4bA_
25.4 5 PDB header:transferase
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a
16c2fvfA_
23.9 14 PDB header:biosynthetic protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: structure of 10:0-acp (protein with docked fatty acid)
17c3ce7A_
23.3 14 PDB header:biosynthetic protein
Chain: A: PDB Molecule:specific mitochodrial acyl carrier protein;
PDBTitle: crystal structure of toxoplasma specific mitochodrial acyl2 carrier protein, 59.m03510
18c1x3oA_
23.0 14 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of the acyl carrier protein from thermus2 thermophilus hb8
19c2ehtA_
22.4 14 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of acyl carrier protein from aquifex aeolicus (form2 2)
20c3d9wA_
21.5 17 PDB header:transferase
Chain: A: PDB Molecule:putative acetyltransferase;
PDBTitle: crystal structure analysis of nocardia farcinica arylamine2 n-acetyltransferase
21c2cnrA_
not modelled 21.3 29 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: structural studies on the interaction of scfas acp with2 acps
22d1t3ta1
not modelled 20.8 22 Fold:RuvA C-terminal domain-like
Superfamily:FGAM synthase PurL, linker domain
Family:FGAM synthase PurL, linker domain
23d1gyta2
not modelled 20.3 29 Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Leucine aminopeptidase, C-terminal domain
24c2fq2A_
not modelled 19.5 10 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum
25c2vefB_
not modelled 18.9 31 PDB header:transferase
Chain: B: PDB Molecule:dihydropteroate synthase;
PDBTitle: dihydropteroate synthase from streptococcus pneumoniae
26c3ejbC_
not modelled 18.3 14 PDB header:oxidoreductase/lipid transport
Chain: C: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of p450bioi in complex with tetradecanoic2 acid ligated acyl carrier protein
27c2dnwA_
not modelled 18.0 14 PDB header:transport protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna
28d1vlpa1
not modelled 17.6 11 Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
29c2cgqA_
not modelled 17.4 5 PDB header:protein transport
Chain: A: PDB Molecule:acyl carrier protein acpa;
PDBTitle: a putative acyl carrier protein(rv0033) from mycobacterium2 tuberculosis
30c3jruB_
not modelled 17.0 38 PDB header:hydrolase
Chain: B: PDB Molecule:probable cytosol aminopeptidase;
PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331
31d2pnga1
not modelled 17.0 32 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
32c1gytG_
not modelled 16.0 29 PDB header:hydrolase
Chain: G: PDB Molecule:cytosol aminopeptidase;
PDBTitle: e. coli aminopeptidase a (pepa)
33d1d0qa_
not modelled 16.0 32 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
34c3kr5E_
not modelled 16.0 19 PDB header:hydrolase
Chain: E: PDB Molecule:m17 leucyl aminopeptidase;
PDBTitle: structure of a protease 4
35d1xm8a_
not modelled 15.9 17 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
36c2amwA_
not modelled 15.5 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ne2163;
PDBTitle: solution nmr structure of protein ne2163 from nitrosomonas europaea.2 northeast structural genomics consortium target net1.
37c2lkiA_
not modelled 15.5 9 PDB header:lipid transport
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution nmr structure of holo acyl carrier protein ne2163 from2 nitrosomonas europaea. northeast structural genomics consortium3 target net1.
38d1k47a1
not modelled 15.1 9 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
39c2kwlA_
not modelled 14.9 20 PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of acyl carrier protein from borrelia burgdorferi
40d1lama1
not modelled 14.6 31 Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Leucine aminopeptidase, C-terminal domain
41d1ybea2
not modelled 14.0 14 Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
42c2l3vA_
not modelled 13.9 26 PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: nmr structure of acyl carrier protein from brucella melitensis
43c3kzwD_
not modelled 13.6 25 PDB header:hydrolase
Chain: D: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col
44c3peiA_
not modelled 13.3 25 PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis
45d1or5a_
not modelled 12.9 23 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
46d1t8ka_
not modelled 12.8 14 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
47c2bmbA_
not modelled 12.5 33 PDB header:transferase
Chain: A: PDB Molecule:folic acid synthesis protein fol1;
PDBTitle: x-ray structure of the bifunctional 6-hydroxymethyl-7,8-2 dihydroxypterin pyrophosphokinase dihydropteroate synthase3 from saccharomyces cerevisiae
48c1lanA_
not modelled 12.5 31 PDB header:hydrolase (alpha-aminoacylpeptide)
Chain: A: PDB Molecule:leucine aminopeptidase;
PDBTitle: leucine aminopeptidase complex with l-leucinal
49d1dv5a_
not modelled 12.3 25 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:apo-D-alanyl carrier protein
50d3bl9a2
not modelled 11.9 14 Fold:mRNA decapping enzyme DcpS N-terminal domain
Superfamily:mRNA decapping enzyme DcpS N-terminal domain
Family:mRNA decapping enzyme DcpS N-terminal domain
51c1wd6B_
not modelled 11.9 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydhr;
PDBTitle: crystal structure of jw1657 from escherichia coli
52c2uv1B_
not modelled 11.8 14 PDB header:inhibitor
Chain: B: PDB Molecule:host-nuclease inhibitor protein gam;
PDBTitle: hexagonal crystal form of gams from bacteriophage lambda.
53c3d5pB_
not modelled 11.7 21 PDB header:gene regulation
Chain: B: PDB Molecule:putative glucan synthesis regulator of smi1/knr4 family;
PDBTitle: crystal structure of a putative glucan synthesis regulator of2 smi1/knr4 family (bf1740) from bacteroides fragilis nctc 9343 at 1.453 a resolution
54d1nq4a_
not modelled 11.6 30 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
55d1vkua_
not modelled 11.5 5 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
56d1klpa_
not modelled 11.4 18 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
57c3ij3A_
not modelled 11.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii
58d1s4ea1
not modelled 10.8 22 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
59c2y5sA_
not modelled 10.8 28 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate.
60d1j2jb_
not modelled 10.5 17 Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
61d1eyea_
not modelled 10.5 31 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
62d1qh5a_
not modelled 10.4 27 Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
63c3h8gC_
not modelled 10.0 29 PDB header:hydrolase
Chain: C: PDB Molecule:cytosol aminopeptidase;
PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida
64c3gdfA_
not modelled 9.9 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nadp-dependent mannitol dehydrogenase;
PDBTitle: crystal structure of the nadp-dependent mannitol dehydrogenase from2 cladosporium herbarum.
65d2d8xa2
not modelled 9.7 33 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
66c3nwsA_
not modelled 9.5 10 PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 13;
PDBTitle: crystal structure of the n-terminal domain of the yeast telomere-2 binding and telomerase regulatory protein cdc13
67d2py6a1
not modelled 9.2 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:FkbM-like
68c3n00B_
not modelled 9.2 36 PDB header:transcription regulator
Chain: B: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: crystal structure of a deletion mutant of human reverba ligand binding2 domain bound with an ncor id1 peptide determined to 2.60a
69c3lw9B_
not modelled 9.1 12 PDB header:protein transport
Chain: B: PDB Molecule:invasion protein inva;
PDBTitle: structure of a cytoplasmic domain of salmonella inva
70c2vp8A_
not modelled 9.0 38 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase 2;
PDBTitle: structure of mycobacterium tuberculosis rv1207
71d1vlra2
not modelled 9.0 14 Fold:mRNA decapping enzyme DcpS N-terminal domain
Superfamily:mRNA decapping enzyme DcpS N-terminal domain
Family:mRNA decapping enzyme DcpS N-terminal domain
72d2rk5a1
not modelled 8.7 23 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
73d2icga1
not modelled 8.4 23 Fold:SMI1/KNR4-like
Superfamily:SMI1/KNR4-like
Family:SMI1/KNR4-like
74d2af8a_
not modelled 8.3 30 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
75d1w5ra1
not modelled 8.0 24 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
76c2k2wA_
not modelled 7.9 28 PDB header:cell cycle
Chain: A: PDB Molecule:recombination and dna repair protein;
PDBTitle: second brct domain of nbs1
77c3aicC_
not modelled 7.9 14 PDB header:transferase
Chain: C: PDB Molecule:glucosyltransferase-si;
PDBTitle: crystal structure of glucansucrase from streptococcus mutans
78c3llbA_
not modelled 7.8 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
79d2r2za1
not modelled 7.8 15 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
80c2gcuD_
not modelled 7.7 13 PDB header:hydrolase
Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3;
PDBTitle: x-ray structure of gene product from arabidopsis thaliana2 at1g53580
81c2hc9A_
not modelled 7.6 19 PDB header:hydrolase
Chain: A: PDB Molecule:leucine aminopeptidase 1;
PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1)
82c2dgyA_
not modelled 7.4 18 PDB header:translation
Chain: A: PDB Molecule:mgc11102 protein;
PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein
83d2prva1
not modelled 7.4 23 Fold:SMI1/KNR4-like
Superfamily:SMI1/KNR4-like
Family:SMI1/KNR4-like
84c2ejwB_
not modelled 7.3 29 PDB header:oxidoreductase
Chain: B: PDB Molecule:homoserine dehydrogenase;
PDBTitle: homoserine dehydrogenase from thermus thermophilus hb8
85d2o02a1
not modelled 7.2 14 Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
86d1dvka_
not modelled 7.0 16 Fold:Functional domain of the splicing factor Prp18
Superfamily:Functional domain of the splicing factor Prp18
Family:Functional domain of the splicing factor Prp18
87c3pshA_
not modelled 7.0 18 PDB header:metal transport
Chain: A: PDB Molecule:protein hi_1472;
PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate)
88d2tpta3
not modelled 7.0 8 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
89d1pvhb_
not modelled 6.9 16 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Long-chain cytokines
90d2ezwa1
not modelled 6.8 17 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
91d2bsza1
not modelled 6.7 14 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
92d2plia1
not modelled 6.7 15 Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
93c2dzaA_
not modelled 6.7 38 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate
94c1vlpA_
not modelled 6.6 11 PDB header:transferase
Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase;
PDBTitle: crystal structure of a putative nicotinate phosphoribosyltransferase2 (yor209c, npt1) from saccharomyces cerevisiae at 1.75 a resolution
95c3gr6A_
not modelled 6.6 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadh];
PDBTitle: crystal structure of the staphylococcus aureus enoyl-acyl2 carrier protein reductase (fabi) in complex with nadp and3 triclosan
96c2p18A_
not modelled 6.5 10 PDB header:hydrolase
Chain: A: PDB Molecule:glyoxalase ii;
PDBTitle: crystal structure of the leishmania infantum glyoxalase ii
97c3mixA_
not modelled 6.4 16 PDB header:protein transport
Chain: A: PDB Molecule:flagellar biosynthesis protein flha;
PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha
98d3bzka2
not modelled 6.4 27 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
99c3s55F_
not modelled 6.3 38 PDB header:oxidoreductase
Chain: F: PDB Molecule:putative short-chain dehydrogenase/reductase;
PDBTitle: crystal structure of a putative short-chain dehydrogenase/reductase2 from mycobacterium abscessus bound to nad

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0