PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1h99A_

Fold library id	PDB Header	Molecule	Title
c1h99A_	PDB header: transcriptional antiterminator	Chain: A: PDB Molecule: transcription antiterminator lict;	PDBTitle: prd of lict antiterminator from bacillus subtilis

Links to external resources
Added to library: Tue Mar 16 14:18:44 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G A M E K F K T L L Y D I P I E C M E V S E E I I S Y A K L Q L G K K L N D S I Y V S L T D H I N F A I Q R N Q K G L D I K N A L L W E T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G T S
S
S
T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L Y K D E F A I G K E A L V M V K N K T G V S L P E D E A G F I A L H I V N A E L N E E M P N I I N I T K V M E E I L S I V K Y H F K I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F N E E S L H Y Y R F V T D L K F F A Q R L F N G T H M E D D F L L D T V K E K Y H R A Y E C T K K I Q T Y I E R E Y E H K L T S D E L L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T
T T

. . . . . . . . . 220

Sequence L T I D I E R V V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	A	M	E	K	F	K	T	L	L	Y	D	I	P	I	E	C	M	E	V	S	E	E	I	I	S	Y	A	K	L	Q	L	G	K	K	L	N	D	S	I	Y	V	S	L	T	D	H	I	N	F	A	I	Q	R	N	Q	K	G	L	D	I	K	N	A	L	L	W	E	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	G	G	G	T	S			S																							S				T																			T	T						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	Y	K	D	E	F	A	I	G	K	E	A	L	V	M	V	K	N	K	T	G	V	S	L	P	E	D	E	A	G	F	I	A	L	H	I	V	N	A	E	L	N	E	E	M	P	N	I	I	N	I	T	K	V	M	E	E	I	L	S	I	V	K	Y	H	F	K	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T																			S																				T	T	S																								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	N	E	E	S	L	H	Y	Y	R	F	V	T	D	L	K	F	F	A	Q	R	L	F	N	G	T	H	M	E	D	D	F	L	L	D	T	V	K	E	K	Y	H	R	A	Y	E	C	T	K	K	I	Q	T	Y	I	E	R	E	Y	E	H	K	L	T	S	D	E	L	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S																				T						T										T
	.	.	.	.	.	.	.	.	.	220
Sequence	L	T	I	D	I	E	R	V	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)