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Job DescriptionP76257
Confidence99.16%DateThu Jan 5 12:21:18 GMT 2012
Rank63Aligned Residues136
% Identity29%Templatec3ly5A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase ddx18; PDBTitle: ddx18 dead-domain
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40.........50.........60.. .......70.........80..
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Query Sequence  KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA. . . . . . . . . . KKKVIISTGSKALQDQLYSR
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Template Sequence  KEMGFTNMTEIQHKSIRPLLE. . . . GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTF. G
Template Known Secondary structure  TT

B

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TTS
TT

GGG



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   195....200.........210..... ....220.........230.........240.........250.........260........ .
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  DLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVT
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Template Sequence  VLKELMTHHVHTYGLIMGGS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT

S

SSS............................................................
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   270.........280.........
 
   163......170.........180.........190.........200.........210.........220.........230..
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Query Sequence  STNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD
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Template Sequence  . . . . . . . . . . . . . . . . NRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYK. . . NLQCLVIDEADRILD
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S

TT


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   290.........300.........310.........320..... ....330.........340
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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