Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	I	T	A	S	L	V	K	E	L	R	E	R	T	G	A	G	M	M	D	C	K	K	A	L	T	E	A	N	G	D	I	E	L	A	I	E	N	M	R	K	S	G	A	I	K	A	A	K	K	A	G	N	V	A	A	D	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?												?														?	?																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	K	T	K	I	D	G	N	Y	G	I	I	L	E	V	N	C	Q	T	D	F	V	A	K	D	A	G	F	Q	A	F	A	D	K	V	L	D	A	A	V	A	G	K	I	T	D	V	E	V	L	K	A	Q	F	E	E	E	R	V
Secondary structure
SS confidence
Disorder																																														?		?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	L	V	A	K	I	G	E	N	I	N	I	R	R	V	A	A	L	E	G	D	V	L	G	S	Y	Q	H	G	A	R	I	G	V	L	V	A	A	K	G	A	D	E	E	L	V	K	H	I	A	M	H	V	A	A	S	K	P	E	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	K	P	E	D	V	S	A	E	V	V	E	K	E	Y	Q	V	Q	L	D	I	A	M	Q	S	G	K	P	K	E	I	A	E	K	M	V	E	G	R	M	K	K	F	T	G	E	V	S	L	T	G	Q	P	F	V	M	E	P	S	K
Secondary structure
SS confidence
Disorder			?					?													?	?	?	?	?	?	?	?	?																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Sequence		T	V	G	Q	L	L	K	E	H	N	A	E	V	T	G	F	I	R	F	E	V	G	E	G	I	E	K	V	E	T	D	F	A	A	E	V	A	A	M	S	K	Q	S
Secondary structure
SS confidence
Disorder																													?	?	?	?									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1efu chain B Region: 2 - 283 Aligned: 282 Modelled: 282 Confidence: 100.0% Identity: 100% PDB header:complex (two elongation factors) Chain: B: PDB Molecule:elongation factor ts; PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli Phyre2 PDB 3agq chain A Region: 5 - 283 Aligned: 279 Modelled: 279 Confidence: 100.0% Identity: 100% PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Phyre2 PDB 3mmp chain C Region: 4 - 283 Aligned: 280 Modelled: 280 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins Phyre2 PDB 1xb2 chain B Region: 2 - 264 Aligned: 246 Modelled: 258 Confidence: 100.0% Identity: 29% PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex Phyre2 PDB 1aip chain G Region: 5 - 262 Aligned: 185 Modelled: 185 Confidence: 100.0% Identity: 53% PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus Phyre2 PDB 1efu chain B domain 2 Region: 141 - 283 Aligned: 143 Modelled: 143 Confidence: 100.0% Identity: 100% Fold: EF-Ts domain-like Superfamily: Elongation factor Ts (EF-Ts), dimerisation domain Family: Elongation factor Ts (EF-Ts), dimerisation domain Phyre2 PDB 1tfe chain A Region: 57 - 262 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 53% Fold: EF-Ts domain-like Superfamily: Elongation factor Ts (EF-Ts), dimerisation domain Family: Elongation factor Ts (EF-Ts), dimerisation domain Phyre2 PDB 1efu chain B domain 4 Region: 56 - 140 Aligned: 85 Modelled: 85 Confidence: 99.9% Identity: 100% Fold: EF-Ts domain-like Superfamily: Elongation factor Ts (EF-Ts), dimerisation domain Family: Elongation factor Ts (EF-Ts), dimerisation domain Phyre2 PDB 1xb2 chain B domain 2 Region: 54 - 141 Aligned: 88 Modelled: 88 Confidence: 99.9% Identity: 24% Fold: EF-Ts domain-like Superfamily: Elongation factor Ts (EF-Ts), dimerisation domain Family: Elongation factor Ts (EF-Ts), dimerisation domain Phyre2 PDB 1xb2 chain B domain 3 Region: 140 - 264 Aligned: 109 Modelled: 125 Confidence: 99.9% Identity: 27% Fold: EF-Ts domain-like Superfamily: Elongation factor Ts (EF-Ts), dimerisation domain Family: Elongation factor Ts (EF-Ts), dimerisation domain Phyre2 PDB 1efu chain B domain 3 Region: 2 - 55 Aligned: 54 Modelled: 54 Confidence: 99.8% Identity: 100% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1aip chain C domain 1 Region: 5 - 55 Aligned: 51 Modelled: 51 Confidence: 99.8% Identity: 55% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1xb2 chain B domain 1 Region: 2 - 55 Aligned: 54 Modelled: 54 Confidence: 99.8% Identity: 30% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 2cp9 chain A domain 1 Region: 5 - 54 Aligned: 50 Modelled: 50 Confidence: 99.7% Identity: 32% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 1ify chain A Region: 7 - 41 Aligned: 34 Modelled: 35 Confidence: 96.7% Identity: 18% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1tr8 chain A Region: 3 - 41 Aligned: 39 Modelled: 39 Confidence: 96.6% Identity: 33% PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) Phyre2 PDB 1wiv chain A Region: 2 - 41 Aligned: 39 Modelled: 40 Confidence: 96.3% Identity: 33% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 1veg chain A Region: 2 - 45 Aligned: 43 Modelled: 44 Confidence: 96.2% Identity: 21% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2dai chain A Region: 4 - 44 Aligned: 40 Modelled: 41 Confidence: 95.8% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) Phyre2 PDB 2dak chain A Region: 2 - 41 Aligned: 39 Modelled: 40 Confidence: 95.7% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) Phyre2 1 c1efuB_ 2 c3agqA_ 3 c3mmpC_ 4 c1xb2B_ 5 c1aipG_ 6 d1efub2 7 d1tfea_ 8 d1efub4 9 d1xb2b2 10 d1xb2b3 11 d1efub3 12 d1aipc1 13 d1xb2b1 14 d2cp9a1 15 d1ifya_ 16 c1tr8A_ 17 d1wiva_ 18 d1vega_ 19 c2daiA_ 20 c2dakA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1efuB_ 100.0 100 PDB header:complex (two elongation factors) Chain: B: PDB Molecule:elongation factor ts; PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli 2 c3agqA_ 100.0 100 PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii 3 c3mmpC_ 100.0 100 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 4 c1xb2B_ 100.0 29 PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex 5 c1aipG_ 100.0 53 PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus 6 d1efub2 100.0 100 Fold:EF-Ts domain-like Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain Family:Elongation factor Ts (EF-Ts), dimerisation domain 7 d1tfea_ 100.0 53 Fold:EF-Ts domain-like Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain Family:Elongation factor Ts (EF-Ts), dimerisation domain 8 d1efub4 99.9 100 Fold:EF-Ts domain-like Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain Family:Elongation factor Ts (EF-Ts), dimerisation domain 9 d1xb2b2 99.9 24 Fold:EF-Ts domain-like Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain Family:Elongation factor Ts (EF-Ts), dimerisation domain 10 d1xb2b3 99.9 27 Fold:EF-Ts domain-like Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain Family:Elongation factor Ts (EF-Ts), dimerisation domain 11 d1efub3 99.8 100 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 12 d1aipc1 99.8 55 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 13 d1xb2b1 99.8 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 14 d2cp9a1 99.7 32 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 15 d1ifya_ 96.7 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 16 c1tr8A_ 96.6 33 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 17 d1wiva_ 96.3 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 18 d1vega_ 96.2 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 19 c2daiA_ 95.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 20 c2dakA_ 95.7 21 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 21 c2dagA_ not modelled 94.7 21 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 22 c1wr1B_ not modelled 94.7 14 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 23 c2jy5A_ not modelled 94.4 25 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 24 d1veja1 not modelled 94.3 31 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 25 c2dahA_ not modelled 94.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 26 c2cpwA_ not modelled 94.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 27 d1whca_ not modelled 94.1 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 28 d1oqya1 not modelled 94.1 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 29 d2dnaa1 not modelled 93.8 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 30 d1wj7a1 not modelled 93.7 37 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 31 c2dnaA_ not modelled 93.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 32 d2bwba1 not modelled 93.7 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 33 d1veka_ not modelled 93.5 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 34 c2cwbA_ not modelled 93.3 25 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 35 d2daha1 not modelled 93.2 26 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 36 d2cpwa1 not modelled 92.9 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 37 d1vdla_ not modelled 92.2 35 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 38 d2crna1 not modelled 92.0 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 39 c2crnA_ not modelled 91.6 23 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 40 d1v92a_ not modelled 89.7 27 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 41 d2g3qa1 not modelled 89.4 28 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 42 d1oaia_ not modelled 88.2 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 43 c2jp7A_ not modelled 85.8 21 PDB header:translation Chain: A: PDB Molecule:mrna export factor mex67; PDBTitle: nmr structure of the mex67 uba domain 44 c2damA_ not modelled 85.4 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:etea protein; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human etea protein 45 c2dalA_ not modelled 85.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein kiaa0794; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein 46 d1go5a_ not modelled 85.1 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 47 c2do6A_ not modelled 84.8 30 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 48 c2d9sA_ not modelled 84.4 37 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 49 c3bq3A_ not modelled 82.4 15 PDB header:cell cycle, ligase Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: crystal structure of s. cerevisiae dcn1 50 d1oqya2 not modelled 80.1 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 51 c2jnhA_ not modelled 79.1 30 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 52 d1dd3a2 not modelled 75.9 32 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 53 d1ctfa_ not modelled 71.0 23 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 54 d2zjq51 not modelled 63.1 30 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 55 c2zjq5_ not modelled 63.1 30 PDB header:ribosome Chain: 5: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: interaction of l7 with l11 induced by microccocin binding2 to the deinococcus radiodurans 50s subunit 56 c1giyJ_ not modelled 59.3 32 PDB header:ribosome Chain: J: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix 57 d1z96a1 not modelled 53.8 32 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 58 d1wjia_ not modelled 53.2 25 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 59 d1dv0a_ not modelled 50.6 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 60 c3k6gA_ not modelled 46.5 14 PDB header:protein binding Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1; PDBTitle: crystal structure of rap1 and trf2 complex 61 c2ftcF_ not modelled 37.9 29 PDB header:ribosome Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 62 d1lgta2 not modelled 30.5 16 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 63 d1wgla_ not modelled 28.2 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 64 d2qswa1 not modelled 25.3 46 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 65 c2gya3_ not modelled 25.1 23 PDB header:ribosome Chain: 3: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 66 c1zswA_ not modelled 23.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family 67 d1fipa_ not modelled 20.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 68 d1zq1a1 not modelled 20.2 38 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 69 d3dhxa1 not modelled 20.0 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 70 c2zi8A_ not modelled 19.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:probable biphenyl-2,3-diol 1,2-dioxygenase bphc; PDBTitle: crystal structure of the hsac extradiol dioxygenase from m.2 tuberculosis in complex with 3,4-dihydroxy-9,10-3 seconandrost-1,3,5(10)-triene-9,17-dione (dhsa) 71 c3cz6A_ not modelled 18.3 26 PDB header:protein binding Chain: A: PDB Molecule:dna-binding protein rap1; PDBTitle: crystal structure of the rap1 c-terminus 72 c1knfA_ not modelled 18.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:2,3-dihydroxybiphenyl 1,2-dioxygenase; PDBTitle: crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase complexed2 with 3-methyl catechol under anaerobic condition 73 c2dhyA_ not modelled 17.9 9 PDB header:immune system Chain: A: PDB Molecule:cue domain-containing protein 1; PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1) 74 d1kw3b2 not modelled 16.5 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 75 c2xecD_ not modelled 15.7 18 PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris 76 c2kjgA_ not modelled 15.6 22 PDB header:metal binding protein Chain: A: PDB Molecule:archaeal protein sso6904; PDBTitle: solution structure of an archaeal protein sso6904 from2 hyperthermophilic sulfolobus solfataricus 77 c2kc2A_ not modelled 14.9 33 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the f1 domain (residues 86-202) of the2 talin 78 c3rmuD_ not modelled 14.8 16 PDB header:isomerase Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial; PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee 79 c3fmyA_ not modelled 14.8 4 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 80 d1zhva2 not modelled 14.7 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 81 c3c4mD_ not modelled 14.6 43 PDB header:membrane protein Chain: D: PDB Molecule:parathyroid hormone; PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 82 c3c4mC_ not modelled 14.6 43 PDB header:membrane protein Chain: C: PDB Molecule:parathyroid hormone; PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 83 c1umqA_ not modelled 14.0 0 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 84 d1umqa_ not modelled 14.0 0 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 85 d2cosa1 not modelled 13.6 37 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 86 c2ei2A_ not modelled 13.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:1,2-dihydroxynaphthalene dioxygenase; PDBTitle: crystal structure analysis of the 1,2-dihydroxynaphthalene dioxygenase2 from pseudomonas sp. stain c18 87 d2dsya1 not modelled 13.0 33 Fold:TTHA1013/TTHA0281-like Superfamily:TTHA1013/TTHA0281-like Family:TTHA0281-like 88 d1ysra1 not modelled 12.9 13 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:Histidine kinase 89 c3nicA_ not modelled 12.7 8 PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f 90 d2flia1 not modelled 12.3 31 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 91 d2qrra1 not modelled 12.0 38 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 92 d1etob_ not modelled 11.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 93 c1zwgA_ not modelled 11.7 43 PDB header:hormone Chain: A: PDB Molecule:parathyroid hormone; PDBTitle: succinyl human parathyroid hormone 4-37, nmr, 10 structures 94 d1mpya1 not modelled 11.3 6 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 95 d1hsta_ not modelled 11.3 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 96 c1xg2B_ not modelled 11.2 13 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:pectinesterase inhibitor; PDBTitle: crystal structure of the complex between pectin2 methylesterase and its inhibitor protein 97 c1zhvA_ not modelled 11.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8. 98 c3pkwA_ not modelled 10.9 9 PDB header:lyase Chain: A: PDB Molecule:toxoflavin lyase (tfla); PDBTitle: crystal structure of toxoflavin lyase (tfla) bound to mn(ii) 99 c3ey7B_ not modelled 10.7 12 PDB header:oxidoreductase Chain: B: PDB Molecule:biphenyl-2,3-diol 1,2-dioxygenase iii-related PDBTitle: structure from the mobile metagenome of v. cholerae.2 integron cassette protein vch_cass1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0