Secondary structure and disorder prediction

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Sequence		M	T	D	K	I	R	T	L	Q	G	R	V	V	S	D	K	M	E	K	S	I	V	V	A	I	E	R	F	V	K	H	P	I	Y	G	K	F	I	K	R	T	T	K	L	H	V	H	D	E	N	N	E	C	G	I	G	D	V	V	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Sequence		I	R	E	C	R	P	L	S	K	T	K	S	W	T	L	V	R	V	V	E	K	A	V	L
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2xzn chain Q Region: 1 - 84 Aligned: 84 Modelled: 84 Confidence: 100.0% Identity: 24% PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Phyre2 PDB 2gy9 chain Q domain 1 Region: 6 - 83 Aligned: 78 Modelled: 78 Confidence: 100.0% Identity: 100% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3bbn chain Q Region: 5 - 82 Aligned: 78 Modelled: 78 Confidence: 100.0% Identity: 37% PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 2uub chain Q domain 1 Region: 6 - 82 Aligned: 77 Modelled: 77 Confidence: 100.0% Identity: 49% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1i94 chain Q Region: 6 - 82 Aligned: 77 Modelled: 77 Confidence: 100.0% Identity: 49% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1s1h chain Q Region: 6 - 80 Aligned: 75 Modelled: 75 Confidence: 100.0% Identity: 35% PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 1rip chain A Region: 4 - 83 Aligned: 80 Modelled: 80 Confidence: 100.0% Identity: 54% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2zkq chain Q Region: 6 - 81 Aligned: 75 Modelled: 76 Confidence: 100.0% Identity: 36% PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 3izb chain P Region: 1 - 59 Aligned: 59 Modelled: 59 Confidence: 99.8% Identity: 31% PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 3iz6 chain P Region: 1 - 59 Aligned: 59 Modelled: 59 Confidence: 99.8% Identity: 24% PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1e32 chain A domain 1 Region: 53 - 65 Aligned: 13 Modelled: 13 Confidence: 26.8% Identity: 38% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Cdc48 N-terminal domain-like Phyre2 PDB 2xzm chain 1 Region: 53 - 66 Aligned: 14 Modelled: 14 Confidence: 26.0% Identity: 50% PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein s28e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 1neg chain A Region: 35 - 63 Aligned: 29 Modelled: 29 Confidence: 23.6% Identity: 7% PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure analysis of n-and c-terminal labeled sh3-2 domain of alpha-chicken spectrin Phyre2 PDB 1neg chain A Region: 35 - 63 Aligned: 29 Modelled: 29 Confidence: 23.6% Identity: 7% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 1ue9 chain A Region: 35 - 63 Aligned: 29 Modelled: 29 Confidence: 22.4% Identity: 14% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 1uue chain A Region: 35 - 63 Aligned: 29 Modelled: 29 Confidence: 21.7% Identity: 7% Fold: SH3-like barrel Superfamily: SH3-domain Family: SH3-domain Phyre2 PDB 1ny4 chain A Region: 53 - 66 Aligned: 14 Modelled: 14 Confidence: 21.6% Identity: 29% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1ne3 chain A Region: 53 - 72 Aligned: 20 Modelled: 20 Confidence: 20.5% Identity: 15% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2pqh chain A Region: 35 - 63 Aligned: 29 Modelled: 29 Confidence: 19.9% Identity: 7% PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: structure of sh3 chimera with a type ii ligand linked to the chain c-2 terminal Phyre2 PDB 2rqr chain A Region: 36 - 63 Aligned: 28 Modelled: 28 Confidence: 19.8% Identity: 25% PDB header:protein binding Chain: A: PDB Molecule:engulfment and cell motility protein 1, linker, dedicator PDBTitle: the solution structure of human dock2 sh3 domain - elmo1 peptide2 chimera complex Phyre2 1 c2xznQ_ 2 d2gy9q1 3 c3bbnQ_ 4 d2uubq1 5 d1i94q_ 6 c1s1hQ_ 7 d1ripa_ 8 c2zkqq_ 9 c3izbP_ 10 c3iz6P_ 11 d1e32a1 12 c2xzm1_ 13 c1negA_ 14 d1nega_ 15 d1ue9a_ 16 d1uuea_ 17 d1ny4a_ 18 d1ne3a_ 19 c2pqhA_ 20 c2rqrA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2xznQ_ 100.0 24 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 2 d2gy9q1 100.0 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 3 c3bbnQ_ 100.0 37 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 4 d2uubq1 100.0 49 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 5 d1i94q_ 100.0 49 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 6 c1s1hQ_ 100.0 35 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 7 d1ripa_ 100.0 54 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 8 c2zkqq_ 100.0 36 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 9 c3izbP_ 99.8 31 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 10 c3iz6P_ 99.8 24 PDB header:ribosome Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 11 d1e32a1 26.8 38 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 12 c2xzm1_ 26.0 50 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein s28e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 13 c1negA_ 23.6 7 PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: crystal structure analysis of n-and c-terminal labeled sh3-2 domain of alpha-chicken spectrin 14 d1nega_ 23.6 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 15 d1ue9a_ 22.4 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 16 d1uuea_ 21.7 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 17 d1ny4a_ 21.6 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 18 d1ne3a_ 20.5 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 19 c2pqhA_ 19.9 7 PDB header:structural protein Chain: A: PDB Molecule:spectrin alpha chain, brain; PDBTitle: structure of sh3 chimera with a type ii ligand linked to the chain c-2 terminal 20 c2rqrA_ 19.8 25 PDB header:protein binding Chain: A: PDB Molecule:engulfment and cell motility protein 1, linker, dedicator PDBTitle: the solution structure of human dock2 sh3 domain - elmo1 peptide2 chimera complex 21 d1h8ka_ not modelled 19.8 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 22 c2jvvA_ not modelled 19.6 12 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 23 c2kvqG_ not modelled 19.6 12 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 24 d1utia_ not modelled 19.4 17 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 25 d1e6ga_ not modelled 19.3 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 26 c2d8jA_ not modelled 19.0 10 PDB header:transferase Chain: A: PDB Molecule:fyn-related kinase; PDBTitle: solution structure of the sh3 domain of fyn-related kinase 27 c3d3rA_ not modelled 18.9 24 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 28 d1nz9a_ not modelled 18.9 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 29 c3nmzD_ not modelled 18.6 25 PDB header:cell adhesion/cell cycle Chain: D: PDB Molecule:rho guanine nucleotide exchange factor 4; PDBTitle: crytal structure of apc complexed with asef 30 d3d3ra1 not modelled 18.4 24 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 31 c2dl3A_ not modelled 18.3 16 PDB header:cell adhesion, signaling protein Chain: A: PDB Molecule:sorbin and sh3 domain-containing protein 1; PDBTitle: solution structure of the first sh3 domain of human sorbin2 and sh3 domain-containing protein 1 32 c2dmoA_ not modelled 18.1 10 PDB header:signaling protein Chain: A: PDB Molecule:neutrophil cytosol factor 2; PDBTitle: refined solution structure of the 1st sh3 domain from human2 neutrophil cytosol factor 2 (ncf-2) 33 d2ot2a1 not modelled 17.9 27 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 34 d1arka_ not modelled 17.6 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 35 c2nwmA_ not modelled 17.6 16 PDB header:cell adhesion Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the first sh3 domain of human vinexin2 and its interaction with the peptides from vinculin 36 d1nppa2 not modelled 17.5 36 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 37 d1gria2 not modelled 17.3 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 38 d1k4us_ not modelled 17.3 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 39 d1dzfa2 not modelled 17.3 18 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 40 d1u0la1 not modelled 17.1 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 41 d1uj0a_ not modelled 17.1 6 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 42 d1udxa3 not modelled 16.9 36 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 43 c2jteA_ not modelled 16.9 7 PDB header:signaling protein Chain: A: PDB Molecule:cd2-associated protein; PDBTitle: third sh3 domain of cd2ap 44 d1i07a_ not modelled 16.6 21 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 45 c2yupA_ not modelled 16.5 7 PDB header:cell adhesion Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the second sh3 domain of human vinexin 46 d2z1ca1 not modelled 16.5 22 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 47 c1zx6A_ not modelled 16.4 14 PDB header:protein binding Chain: A: PDB Molecule:ypr154wp; PDBTitle: high-resolution crystal structure of yeast pin3 sh3 domain 48 c1x2pA_ not modelled 16.0 17 PDB header:transferase Chain: A: PDB Molecule:protein arginine n-methyltransferase 2; PDBTitle: solution structure of the sh3 domain of the protein2 arginine n-methyltransferase 2 49 c3cqtA_ not modelled 15.8 15 PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fyn; PDBTitle: n53i v55l mutant of fyn sh3 domain 50 d1hmja_ not modelled 15.7 24 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 51 c2ct3A_ not modelled 15.6 21 PDB header:signaling protein Chain: A: PDB Molecule:vinexin; PDBTitle: solution structure of the sh3 domain of the vinexin protein 52 d1pwta_ not modelled 15.4 6 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 53 c2e5kA_ not modelled 15.3 10 PDB header:protein binding Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1; PDBTitle: solution structure of sh3 domain in suppressor of t-cell2 receptor signaling 1 54 c2xmfA_ not modelled 15.2 16 PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3 55 c2crvA_ not modelled 14.7 31 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-2; PDBTitle: solution structure of c-terminal domain of mitochondrial2 translational initiationfactor 2 56 c3p8bB_ not modelled 14.6 25 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 57 d1ppya_ not modelled 14.2 36 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 58 d1e6ha_ not modelled 14.2 7 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 59 c2dl8A_ not modelled 14.1 5 PDB header:signaling protein Chain: A: PDB Molecule:slit-robo rho gtpase-activating protein 2; PDBTitle: solution structure of the sh3 domain of human slit-robo rho2 gtpase-activating protein 2 60 d1t9ha1 not modelled 14.1 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 61 c3iz6Y_ not modelled 13.9 21 PDB header:ribosome Chain: Y: PDB Molecule:40s ribosomal protein s28 (s28e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 62 c2dlpA_ not modelled 13.8 7 PDB header:structural protein Chain: A: PDB Molecule:kiaa1783 protein; PDBTitle: solution structure of the sh3 domain of human kiaa17832 protein 63 c2d8hA_ not modelled 13.8 10 PDB header:unknown function Chain: A: PDB Molecule:sh3yl1 protein; PDBTitle: solution structure of the sh3 domain of hypothetical2 protein sh3yl1 64 c2c45F_ not modelled 13.6 27 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 65 c3ougA_ not modelled 13.5 45 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis 66 c1pt1B_ not modelled 13.4 36 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 67 c2krnA_ not modelled 13.3 28 PDB header:signaling protein Chain: A: PDB Molecule:cd2-associated protein; PDBTitle: high resolution structure of the second sh3 domain of cd2ap 68 c2dbkA_ not modelled 13.2 15 PDB header:signaling protein Chain: A: PDB Molecule:crk-like protein; PDBTitle: solution structures of the sh3 domain of human crk-like2 protein 69 c1wxbA_ not modelled 13.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:epidermal growth factor receptor pathway PDBTitle: solution structure of the sh3 domain from human epidermal2 growth factor receptor pathway substrate 8-like protein 70 d1oeba_ not modelled 13.0 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 71 d1opka1 not modelled 13.0 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 72 d1wpga1 not modelled 12.9 25 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 73 d2uubd1 not modelled 12.9 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 74 c3plxB_ not modelled 12.7 36 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 75 d2f4la1 not modelled 12.4 18 Fold:CUB-like Superfamily:Acetamidase/Formamidase-like Family:Acetamidase/Formamidase-like 76 c1vc3B_ not modelled 12.4 27 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 77 c1uheA_ not modelled 12.4 55 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 78 c2rf0D_ not modelled 12.3 14 PDB header:transferase Chain: D: PDB Molecule:mitogen-activated protein kinase kinase kinase 10; PDBTitle: crystal structure of human mixed lineage kinase map3k10 sh3 domain 79 c2eyxA_ not modelled 12.1 17 PDB header:signaling protein Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog PDBTitle: c-terminal sh3 domain of ct10-regulated kinase 80 c2dilA_ not modelled 12.1 10 PDB header:cell adhesion Chain: A: PDB Molecule:proline-serine-threonine phosphatase-interacting PDBTitle: solution structure of the sh3 domain of the human proline-2 serine-threonine phosphatase-interacting protein 1 81 d1g31a_ not modelled 12.1 18 Fold:GroES-like Superfamily:GroES-like Family:GroES 82 c2ct4A_ not modelled 11.8 14 PDB header:signaling protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: solution strutcure of the sh3 domain of the cdc42-2 interacting protein 4 83 d1c06a_ not modelled 11.8 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 84 c1pyuD_ not modelled 11.7 36 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 85 c2yuoA_ not modelled 11.7 21 PDB header:signaling protein Chain: A: PDB Molecule:run and tbc1 domain containing 3; PDBTitle: solution structure of the sh3 domain of mouse run and tbc12 domain containing 3 86 c2i0nA_ not modelled 11.6 19 PDB header:structural protein Chain: A: PDB Molecule:class vii unconventional myosin; PDBTitle: structure of dictyostelium discoideum myosin vii sh3 domain2 with adjacent proline rich region 87 d1ov3a1 not modelled 11.5 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 88 c1z9zA_ not modelled 11.5 13 PDB header:structural protein Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: crystal structure of yeast sla1 sh3 domain 3 89 c2k6dA_ not modelled 11.5 14 PDB header:sh3 domain/ubiquitin Chain: A: PDB Molecule:sh3 domain-containing kinase-binding protein 1; PDBTitle: cin85 sh3-c domain in complex with ubiquitin 90 c1yn8E_ not modelled 11.4 21 PDB header:unknown function Chain: E: PDB Molecule:nap1-binding protein 2; PDBTitle: sh3 domain of yeast nbp2 91 d1j3ta_ not modelled 11.3 15 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 92 c2djqA_ not modelled 11.3 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: the solution structure of the first sh3 domain of mouse sh32 domain containing ring finger 2 93 c2creA_ not modelled 11.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hef-like protein; PDBTitle: solution structure of rsgi ruh-036, an sh3 domain from2 human cdna 94 c1w70A_ not modelled 11.1 10 PDB header:sh3 domain Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: sh3 domain of p40phox complexed with c-terminal polyproline2 region of p47phox 95 c1wi7A_ not modelled 11.0 17 PDB header:protein binding Chain: A: PDB Molecule:sh3-domain kinase binding protein 1; PDBTitle: solution structure of the sh3 domain of sh3-domain kinase2 binding protein 1 96 d2fo0a1 not modelled 11.0 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 97 c2cucA_ not modelled 11.0 10 PDB header:signaling protein Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: solution structure of the sh3 domain of the mouse2 hypothetical protein sh3rf2 98 c1zukA_ not modelled 10.9 6 PDB header:contractile protein Chain: A: PDB Molecule:myosin tail region-interacting protein mti1; PDBTitle: yeast bbc1 sh3 domain complexed with a peptide from las17 99 c3mmlD_ not modelled 10.9 24 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0