Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	V	I	L	D	L	Q	L	A	C	E	D	N	S	G	L	P	E	E	S	Q	F	Q	T	W	L	N	A	V	I	P	Q	F	Q	E	E	S	E	V	T	I	R	V	V	D	T	A	E	S	H	S	L	N	L	T	Y	R	G
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	D	K	P	T	N	V	L	S	F	P	F	E	V	P	P	G	M	E	M	S	L	L	G	D	L	V	I	C	R	Q	V	V	E	K	E	A	Q	E	Q	G	K	P	L	E	A	H	W	A	H	M	V	V	H	G	S	L	H	L	L
Secondary structure
SS confidence
Disorder																	?		?																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Sequence		G	Y	D	H	I	E	D	D	E	A	E	E	M	E	A	L	E	T	E	I	M	L	A	L	G	Y	E	D	P	Y	I	A	E	K	E
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xm5 chain A Region: 1 - 152 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 100% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Predicted metal-dependent hydrolase Phyre2 PDB 1xax chain A Region: 4 - 146 Aligned: 143 Modelled: 143 Confidence: 100.0% Identity: 69% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004; PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae Phyre2 PDB 1oz9 chain A Region: 8 - 144 Aligned: 136 Modelled: 137 Confidence: 100.0% Identity: 33% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Predicted metal-dependent hydrolase Phyre2 PDB 1tvi chain A Region: 8 - 150 Aligned: 137 Modelled: 143 Confidence: 100.0% Identity: 28% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Predicted metal-dependent hydrolase Phyre2 PDB 1xfi chain A Region: 93 - 150 Aligned: 52 Modelled: 58 Confidence: 65.4% Identity: 12% Fold: AF1104-like Superfamily: AF1104-like Family: AF1104-like Phyre2 PDB 1lml chain A Region: 81 - 123 Aligned: 36 Modelled: 43 Confidence: 65.0% Identity: 19% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Leishmanolysin Phyre2 PDB 2xhq chain A Region: 104 - 124 Aligned: 21 Modelled: 21 Confidence: 59.4% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from archaeoglobus2 fulgidus at 1.45 a resolution Phyre2 PDB 2x7m chain A Region: 104 - 124 Aligned: 21 Modelled: 21 Confidence: 55.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution Phyre2 PDB 1k7i chain A domain 2 Region: 19 - 124 Aligned: 99 Modelled: 106 Confidence: 50.3% Identity: 11% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Serralysin-like metalloprotease, catalytic (N-terminal) domain Phyre2 PDB 1u9p chain A Region: 91 - 144 Aligned: 54 Modelled: 54 Confidence: 49.2% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc Phyre2 PDB 1qys chain A Region: 125 - 148 Aligned: 24 Modelled: 24 Confidence: 45.2% Identity: 33% PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold Phyre2 PDB 1wgn chain A Region: 89 - 115 Aligned: 27 Modelled: 27 Confidence: 44.5% Identity: 15% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: UBA domain Phyre2 PDB 2jvf chain A Region: 125 - 148 Aligned: 24 Modelled: 24 Confidence: 44.4% Identity: 33% PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein Phyre2 PDB 1ast chain A Region: 110 - 125 Aligned: 16 Modelled: 16 Confidence: 41.1% Identity: 25% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Astacin Phyre2 PDB 3edh chain A Region: 109 - 125 Aligned: 17 Modelled: 17 Confidence: 41.0% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:bone morphogenetic protein 1; PDBTitle: crystal structure of bone morphogenetic protein 1 protease2 domain in complex with partially bound dmso Phyre2 PDB 3lqb chain A Region: 109 - 125 Aligned: 17 Modelled: 17 Confidence: 40.5% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:loc792177 protein; PDBTitle: crystal structure of the hatching enzyme zhe1 from the zebrafish danio2 rerio Phyre2 PDB 1hv5 chain A Region: 108 - 127 Aligned: 20 Modelled: 20 Confidence: 40.4% Identity: 25% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Matrix metalloproteases, catalytic domain Phyre2 PDB 1y93 chain A domain 1 Region: 108 - 127 Aligned: 20 Modelled: 20 Confidence: 40.3% Identity: 35% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Matrix metalloproteases, catalytic domain Phyre2 PDB 1fbl chain A domain 2 Region: 108 - 127 Aligned: 20 Modelled: 20 Confidence: 38.8% Identity: 30% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Matrix metalloproteases, catalytic domain Phyre2 PDB 2ovx chain A domain 1 Region: 108 - 127 Aligned: 20 Modelled: 20 Confidence: 38.2% Identity: 30% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Matrix metalloproteases, catalytic domain Phyre2 1 d1xm5a_ 2 c1xaxA_ 3 d1oz9a_ 4 d1tvia_ 5 d1xfia_ 6 d1lmla_ 7 c2xhqA_ 8 c2x7mA_ 9 d1k7ia2 10 c1u9pA_ 11 c1qysA_ 12 d1wgna_ 13 c2jvfA_ 14 d1asta_ 15 c3edhA_ 16 c3lqbA_ 17 d1hv5a_ 18 d1y93a1 19 d1fbla2 20 d2ovxa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1xm5a_ 100.0 100 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 2 c1xaxA_ 100.0 69 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004; PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae 3 d1oz9a_ 100.0 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 4 d1tvia_ 100.0 28 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 5 d1xfia_ 65.4 12 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 6 d1lmla_ 65.0 19 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Leishmanolysin 7 c2xhqA_ 59.4 29 PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from archaeoglobus2 fulgidus at 1.45 a resolution 8 c2x7mA_ 55.0 19 PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution 9 d1k7ia2 50.3 11 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 10 c1u9pA_ 49.2 15 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 11 c1qysA_ 45.2 33 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 12 d1wgna_ 44.5 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 13 c2jvfA_ 44.4 33 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 14 d1asta_ 41.1 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Astacin 15 c3edhA_ 41.0 35 PDB header:hydrolase Chain: A: PDB Molecule:bone morphogenetic protein 1; PDBTitle: crystal structure of bone morphogenetic protein 1 protease2 domain in complex with partially bound dmso 16 c3lqbA_ 40.5 29 PDB header:hydrolase Chain: A: PDB Molecule:loc792177 protein; PDBTitle: crystal structure of the hatching enzyme zhe1 from the zebrafish danio2 rerio 17 d1hv5a_ 40.4 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 18 d1y93a1 40.3 35 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 19 d1fbla2 38.8 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 20 d2ovxa1 38.2 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 21 d1cgla_ not modelled 36.8 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 22 d1hova_ not modelled 36.2 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 23 d1hfca_ not modelled 36.1 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 24 d1xuca1 not modelled 34.9 35 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 25 d1q3aa_ not modelled 34.8 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 26 c2jsdA_ not modelled 34.1 30 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-20; PDBTitle: solution structure of mmp20 complexed with nngh 27 d1rm8a_ not modelled 32.5 35 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 28 d1i76a_ not modelled 31.1 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 29 d1qiba_ not modelled 30.6 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 30 c3lq0A_ not modelled 28.5 27 PDB header:hydrolase Chain: A: PDB Molecule:proastacin; PDBTitle: zymogen structure of crayfish astacin metallopeptidase 31 c3lmcA_ not modelled 28.3 29 PDB header:hydrolase Chain: A: PDB Molecule:peptidase, zinc-dependent; PDBTitle: crystal structure of zinc-dependent peptidase from methanocorpusculum2 labreanum (strain z), northeast structural genomics consortium target3 mur16 32 c2xs4A_ not modelled 27.2 30 PDB header:hydrolase Chain: A: PDB Molecule:karilysin protease; PDBTitle: structure of karilysin catalytic mmp domain in complex with2 magnesium 33 d1mmqa_ not modelled 25.9 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 34 c1slmA_ not modelled 25.3 25 PDB header:hydrolase Chain: A: PDB Molecule:stromelysin-1; PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme 35 c3qyyB_ not modelled 24.6 12 PDB header:signaling protein/inhibitor Chain: B: PDB Molecule:response regulator; PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp 36 d1cxva_ not modelled 24.4 35 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 37 c3i5bA_ not modelled 21.5 24 PDB header:signaling protein Chain: A: PDB Molecule:wspr response regulator; PDBTitle: crystal structure of the isolated ggdef domain of wpsr from2 pseudomonas aeruginosa 38 d1hy7a_ not modelled 20.9 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 39 d1eaka2 not modelled 18.8 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 40 c3hvaA_ not modelled 18.6 21 PDB header:transferase Chain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx ggdef domain from pseudomonas2 aeruginosa 41 c2a97B_ not modelled 17.0 17 PDB header:hydrolase Chain: B: PDB Molecule:botulinum neurotoxin type f; PDBTitle: crystal structure of catalytic domain of clostridium2 botulinum neurotoxin serotype f 42 d1w25a3 not modelled 15.6 17 Fold:Ferredoxin-like Superfamily:Nucleotide cyclase Family:GGDEF domain 43 c1jmtB_ not modelled 13.2 31 PDB header:rna binding protein Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit; PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer 44 c3i5cA_ not modelled 11.2 24 PDB header:signaling protein Chain: A: PDB Molecule:fusion of general control protein gcn4 and wspr response PDBTitle: crystal structure of a fusion protein containing the leucine zipper of2 gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa 45 c1om8A_ not modelled 10.9 12 PDB header:hydrolase Chain: A: PDB Molecule:serralysin; PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta 46 c1dowB_ not modelled 10.1 14 PDB header:cell adhesion Chain: B: PDB Molecule:beta-catenin; PDBTitle: crystal structure of a chimera of beta-catenin and alpha-2 catenin 47 c3ba0A_ not modelled 10.0 35 PDB header:hydrolase Chain: A: PDB Molecule:macrophage metalloelastase; PDBTitle: crystal structure of full-length human mmp-12 48 c3bkdC_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: C: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 49 c3bkdH_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: H: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 50 c3bkdB_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: B: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 51 c3bkdA_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: A: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 52 c3bkdG_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: G: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 53 c3bkdD_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: D: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 54 c3bkdE_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: E: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 55 c3bkdF_ not modelled 9.7 50 PDB header:viral protein, membrane protein Chain: F: PDB Molecule:transmembrane domain of matrix protein m2; PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein 56 d1sata2 not modelled 9.7 18 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 57 d3e11a1 not modelled 9.6 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:TTHA0227-like 58 d1gtda_ not modelled 9.1 30 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 59 d1bqqm_ not modelled 8.8 35 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 60 c2rjqA_ not modelled 8.7 38 PDB header:hydrolase Chain: A: PDB Molecule:adamts-5; PDBTitle: crystal structure of adamts5 with inhibitor bound 61 c3iclA_ not modelled 8.5 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:eal/ggdef domain protein; PDBTitle: x-ray structure of protein (eal/ggdef domain protein) from2 m.capsulatus, northeast structural genomics consortium3 target mcr174c 62 c2erpA_ not modelled 8.5 38 PDB header:toxin Chain: A: PDB Molecule:vascular apoptosis-inducing protein 1; PDBTitle: crystal structure of vascular apoptosis-inducing protein-1(inhibitor-2 bound form) 63 d1kufa_ not modelled 8.4 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 64 c3ignA_ not modelled 8.1 19 PDB header:transferase Chain: A: PDB Molecule:diguanylate cyclase; PDBTitle: crystal structure of the ggdef domain from marinobacter2 aquaeolei diguanylate cyclase complexed with c-di-gmp -3 northeast structural genomics consortium target mqr89a 65 c2gjhA_ not modelled 7.7 35 PDB header:de novo protein Chain: A: PDB Molecule:designed protein; PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7) 66 c3gr1A_ not modelled 7.6 10 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 67 c2cltB_ not modelled 7.5 30 PDB header:hydrolase Chain: B: PDB Molecule:interstitial collagenase; PDBTitle: crystal structure of the active form (full-length) of human2 fibroblast collagenase. 68 c2zw2B_ not modelled 7.5 14 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 69 d1atla_ not modelled 7.5 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 70 c2dgbA_ not modelled 7.4 42 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein purs; PDBTitle: structure of thermus thermophilus purs in the p21 form 71 d1k1fa_ not modelled 7.4 16 Fold:Bcr-Abl oncoprotein oligomerization domain Superfamily:Bcr-Abl oncoprotein oligomerization domain Family:Bcr-Abl oncoprotein oligomerization domain 72 c3pjwA_ not modelled 7.3 21 PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 73 c3b8zB_ not modelled 7.0 38 PDB header:hydrolase Chain: B: PDB Molecule:protein adamts-5; PDBTitle: high resolution crystal structure of the catalytic domain2 of adamts-5 (aggrecanase-2) 74 c2dw1B_ not modelled 6.8 30 PDB header:apoptosis, toxin Chain: B: PDB Molecule:catrocollastatin; PDBTitle: crystal structure of vap2 from crotalus atrox venom (form 2-2 crystal) 75 c3e5aB_ not modelled 6.7 17 PDB header:transferase Chain: B: PDB Molecule:targeting protein for xklp2; PDBTitle: crystal structure of aurora a in complex with vx-680 and tpx2 76 d1r55a_ not modelled 6.7 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Reprolysin-like 77 d1t4aa_ not modelled 6.7 31 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 78 c3c0tB_ not modelled 6.4 67 PDB header:transcription Chain: B: PDB Molecule:mediator of rna polymerase ii transcription PDBTitle: structure of the schizosaccharomyces pombe mediator2 subcomplex med8c/18 79 c1p9iA_ not modelled 6.4 21 PDB header:unknown function Chain: A: PDB Molecule:cortexillin i/gcn4 hybrid peptide; PDBTitle: coiled-coil x-ray structure at 1.17 a resolution 80 d2b7ea1 not modelled 6.2 42 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 81 c3ipfA_ not modelled 6.2 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c. 82 c2awyB_ not modelled 6.1 13 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemerythrin-like domain protein dcrh; PDBTitle: met-dcrh-hr 83 d2a6aa2 not modelled 6.1 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 84 d1qf6a4 not modelled 6.0 19 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 85 c3o7kA_ not modelled 6.0 7 PDB header:lyase Chain: A: PDB Molecule:ohcu decarboxylase; PDBTitle: crystal structure of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline2 decarboxylase from klebsiella pneumoniae 86 c3b6nA_ not modelled 5.8 14 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-2 cyclodiphosphate synthase pv003920 from plasmodium vivax 87 c2ppwA_ not modelled 5.8 11 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 88 c3f6nA_ not modelled 5.8 29 PDB header:viral protein, dna-binding protein Chain: A: PDB Molecule:virion-associated protein; PDBTitle: crystal structure of the virion-associated protein p3 from2 caulimovirus 89 d1kapp2 not modelled 5.6 30 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 90 d2g8la1 not modelled 5.6 13 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 91 c2kadA_ not modelled 5.6 40 PDB header:membrane protein Chain: A: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 92 c2kadB_ not modelled 5.6 40 PDB header:membrane protein Chain: B: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 93 c2kadD_ not modelled 5.6 40 PDB header:membrane protein Chain: D: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 94 c2kadC_ not modelled 5.6 40 PDB header:membrane protein Chain: C: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 95 c2v4bB_ not modelled 5.6 18 PDB header:hydrolase Chain: B: PDB Molecule:adamts-1; PDBTitle: crystal structure of human adamts-1 catalytic domain and2 cysteine-rich domain (apo-form) 96 c3dl1A_ not modelled 5.5 27 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent hydrolase; PDBTitle: crystal structure of a putative metal-dependent hydrolase2 (yp_001336084.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.20 a resolution 97 c1fdfA_ not modelled 5.5 29 PDB header:signaling protein Chain: A: PDB Molecule:rhodopsin; PDBTitle: helix 7 bovine rhodopsin 98 d1qmya_ not modelled 5.4 38 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:FMDV leader protease 99 c3k4tB_ not modelled 5.4 29 PDB header:viral protein, dna-binding protein Chain: B: PDB Molecule:virion-associated protein; PDBTitle: crystal structure of the virion-associated protein p3 from2 caulimovirus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0