Job Description P31663 Confidence 93.55% Date Thu Jan 5 11:48:25 GMT 2012 Rank 40 Aligned Residues 230 % Identity 17% Template c2cyaA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase from aeropyrum pernix Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																												.	.	.											.	.	.	.	.
Query SS confidence																																												.	.	.											.	.	.	.	.
Query Sequence		I	E	T	L	P	L	L	R	Q	Q	I	R	R	L	R	M	E	G	K	R	V	A	L	V	P	T	M	G	N	L	H	D	G	H	M	K	L	V	D	E	A	K	.	.	.	A	R	A	D	V	V	V	V	S	I	.	.	.	.	.	F	V	N	P	M	Q	F	D	R	P	E	D	L	A	R	Y	P	R	T	L
Query Conservation																																												.	.	.											.	.	.	.	.
Alig confidence																												.																.	.	.											.	.	.	.	.
Template Conservation																												.
Template Sequence		I	V	T	E	E	E	L	K	G	L	L	A	S	G	A	R	I	K	G	Y	I	G	Y	E	P	S	.	G	V	A	H	I	G	W	L	V	W	M	Y	K	V	K	D	L	V	E	A	G	V	D	F	S	V	L	E	A	T	W	H	A	Y	I	N	D	K	L	G	G	D	M	D	L	I	R	A	A	A	R	I	V
Template Known Secondary structure				T												S												.	S	S		B	T															T	T															T	T	G	G	G	G
Template Predicted Secondary structure																												.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																															.	.
Query SS confidence																			.	.	.	.	.																															.	.
Query Sequence		Q	E	D	C	E	K	L	N	K	R	K	V	D	L	V	F	A	.	.	.	.	.	P	S	V	K	E	I	Y	P	N	G	T	E	T	H	T	Y	V	D	V	P	G	L	S	T	M	L	E	G	A	S	.	.	R	P	G	H	F	R	G	V	S	T	I	V	S	K	L	F	N	L	V	Q	P	D	I	A	C	F
Query Conservation																			.	.	.	.	.																															.	.
Alig confidence																			.	.	.	.	.																															.	.																			.
Template Conservation																																																																										.
Template Sequence		R	R	V	M	E	A	A	G	V	P	V	E	R	V	R	F	V	D	A	E	E	L	A	S	D	K	D	Y	W	G	L	V	I	R	V	A	K	R	A	S	L	A	R	V	R	R	A	L	A	E	E	A	E	V	D	A	S	K	L	I	Y	P	L	M	Q	V	S	D	I	F	Y	M	.	D	L	D	I	A	L	G
Template Known Secondary structure								T	T			G	G	G											T														T	S							T	T				G	G	G	S		T																T	.	T		S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.			190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																					.																	.							.	.				.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																	.							.	.				.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	K	D	F	Q	Q	L	A	L	I	R	K	M	V	A	D	M	G	.	F	D	I	E	I	V	G	V	P	I	M	R	A	K	D	G	.	L	A	L	S	S	R	.	.	N	G	Y	.	.	L	T	A	E	Q	R	K	I	A	P	G	L	Y	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.																	.							.	.				.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																	.							.	.				.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	D	Q	R	K	A	H	M	L	A	R	D	V	A	E	K	L	G	R	K	K	P	V	A	I	H	T	P	I	I	S	S	L	Q	G	P	V	K	M	S	K	S	K	P	E	T	A	V	F	V	V	D	S	D	D	D	I	R	R	K	I	R	K	A	Y	C	P	A	K	Q	V	Q	G	N	P	V	L	E	I
Template Known Secondary structure			G	G	G												T	T	T	T													B		S	S				B			S	S	S	G	G	G	S		B	T	T												T	S				T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
																							208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	S	I	A	D	K	L	Q	A	G	E	R	D	L	D	E	I	I	T	I	A	G	Q	E	L	N	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	Y	I	L	F	A	R	D	G	F	T	L	R	V	D	V	E	Y	T	S	Y	E	E	L	E	R	D	Y	T	D	G	R	L	H	P	L	D	L	K	N	A	V	A	E	S	L	I	E
Template Known Secondary structure					T	T	T	T	S	T	T										S	S										T	T		S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions