Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	N	S	I	R	L	T	Q	Y	S	H	G	A	G	C	G	C	K	I	S	P	K	V	L	E	T	I	L	H	S	E	Q	A	K	F	V	D	P	N	L	L	V	G	N	E	T	R	D	D	A	A	V	Y	D	L	G	N	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?							?			?	?	?	?	?	?	?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	S	V	I	S	T	T	D	F	F	M	P	I	V	D	N	P	F	D	F	G	R	I	A	A	T	N	A	I	S	D	I	F	A	M	G	G	K	P	I	M	A	I	A	I	L	G	W	P	I	N	K	L	S	P	E	I	A	R	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	T	E	G	G	R	Y	A	C	R	Q	A	G	I	A	L	A	G	G	H	S	I	D	A	P	E	P	I	F	G	L	A	V	T	G	I	V	P	T	E	R	V	K	K	N	S	T	A	Q	A	G	C	K	L	F	L	T	K	P	L
Secondary structure
SS confidence
Disorder																																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	I	G	V	L	T	T	A	E	K	K	S	L	L	K	P	E	H	Q	G	L	A	T	E	V	M	C	R	M	N	I	A	G	A	S	F	A	N	I	E	G	V	K	A	M	T	D	V	T	G	F	G	L	L	G	H	L	S	E	M
Secondary structure
SS confidence
Disorder													?	?	?	?		?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		C	Q	G	A	G	V	Q	A	R	V	D	Y	E	A	I	P	K	L	P	G	V	E	E	Y	I	K	L	G	A	V	P	G	G	T	E	R	N	F	A	S	Y	G	H	L	M	G	E	M	P	R	E	V	R	D	L	L	C	D	P	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Sequence		T	S	G	G	L	L	L	A	V	M	P	E	A	E	N	E	V	K	A	T	A	A	E	F	G	I	E	L	T	A	I	G	E	L	V	P	A	R	G	G	R	A	M	V	E	I	R
Secondary structure
SS confidence
Disorder																																																?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fd5 chain B Region: 3 - 345 Aligned: 316 Modelled: 324 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp Phyre2 PDB 2zod chain B Region: 19 - 343 Aligned: 318 Modelled: 320 Confidence: 100.0% Identity: 36% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus Phyre2 PDB 2zau chain B Region: 37 - 343 Aligned: 298 Modelled: 307 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus Phyre2 PDB 2btu chain B Region: 24 - 339 Aligned: 290 Modelled: 296 Confidence: 100.0% Identity: 20% PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. Phyre2 PDB 1cli chain D Region: 26 - 344 Aligned: 294 Modelled: 299 Confidence: 100.0% Identity: 18% PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution Phyre2 PDB 2rb9 chain D Region: 23 - 343 Aligned: 287 Modelled: 297 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype Phyre2 PDB 3mcq chain A Region: 30 - 342 Aligned: 285 Modelled: 291 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution Phyre2 PDB 2z1t chain A Region: 46 - 347 Aligned: 274 Modelled: 278 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype Phyre2 PDB 2z1e chain A Region: 47 - 345 Aligned: 273 Modelled: 275 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) Phyre2 PDB 3c9u chain B Region: 19 - 342 Aligned: 282 Modelled: 304 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp Phyre2 PDB 1vqv chain B Region: 19 - 342 Aligned: 277 Modelled: 304 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus Phyre2 PDB 2yxz chain A Region: 19 - 342 Aligned: 290 Modelled: 302 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 Phyre2 PDB 2z01 chain A Region: 28 - 339 Aligned: 281 Modelled: 292 Confidence: 100.0% Identity: 24% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus Phyre2 PDB 3m84 chain A Region: 26 - 343 Aligned: 293 Modelled: 292 Confidence: 100.0% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis Phyre2 PDB 2v9y chain A Region: 59 - 342 Aligned: 261 Modelled: 264 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase Phyre2 PDB 3ac6 chain A Region: 16 - 343 Aligned: 273 Modelled: 288 Confidence: 100.0% Identity: 23% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus Phyre2 PDB 2hs0 chain A Region: 16 - 343 Aligned: 267 Modelled: 275 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp Phyre2 PDB 3d54 chain I Region: 16 - 343 Aligned: 268 Modelled: 282 Confidence: 100.0% Identity: 18% PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima Phyre2 PDB 2zod chain A domain 2 Region: 163 - 343 Aligned: 181 Modelled: 181 Confidence: 100.0% Identity: 33% Fold: PurM C-terminal domain-like Superfamily: PurM C-terminal domain-like Family: PurM C-terminal domain-like Phyre2 PDB 3mdo chain B Region: 59 - 347 Aligned: 265 Modelled: 269 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution Phyre2 1 c3fd5B_ 2 c2zodB_ 3 c2zauB_ 4 c2btuB_ 5 c1cliD_ 6 c2rb9D_ 7 c3mcqA_ 8 c2z1tA_ 9 c2z1eA_ 10 c3c9uB_ 11 c1vqvB_ 12 c2yxzA_ 13 c2z01A_ 14 c3m84A_ 15 c2v9yA_ 16 c3ac6A_ 17 c2hs0A_ 18 c3d54I_ 19 d2zoda2 20 c3mdoB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3fd5B_ 100.0 28 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp 2 c2zodB_ 100.0 36 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 3 c2zauB_ 100.0 37 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus 4 c2btuB_ 100.0 20 PDB header:synthase Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase; PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution. 5 c1cliD_ 100.0 18 PDB header:ligase Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase); PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution 6 c2rb9D_ 100.0 23 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hype protein; PDBTitle: crystal structure of e.coli hype 7 c3mcqA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:thiamine-monophosphate kinase; PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution 8 c2z1tA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hydrogenase maturation protein hype 9 c2z1eA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) 10 c3c9uB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: aathil complexed with adp and tpp 11 c1vqvB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:thiamine monophosphate kinase; PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus 12 c2yxzA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:thiamin-monophosphate kinase; PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8 13 c2z01A_ 100.0 24 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus 14 c3m84A_ 100.0 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis 15 c2v9yA_ 100.0 20 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase 16 c3ac6A_ 100.0 23 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2; PDBTitle: crystal structure of purl from thermus thermophilus 17 c2hs0A_ 100.0 17 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: t. maritima purl complexed with atp 18 c3d54I_ 100.0 18 PDB header:ligase Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii; PDBTitle: stucture of purlqs from thermotoga maritima 19 d2zoda2 100.0 33 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 20 c3mdoB_ 100.0 17 PDB header:ligase Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution 21 c1t3tA_ not modelled 100.0 19 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 22 d2zoda1 not modelled 100.0 38 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 23 c3kizA_ not modelled 100.0 18 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 24 d2zaua1 not modelled 100.0 42 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 25 d2z1ea2 not modelled 100.0 21 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 26 d3c9ua1 not modelled 100.0 21 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 27 d1clia2 not modelled 100.0 15 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 28 d1clib1 not modelled 100.0 21 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 29 d1clia1 not modelled 99.9 21 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 30 d3c9ua2 not modelled 99.9 18 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 31 d1vk3a2 not modelled 99.9 15 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 32 d2z1ea1 not modelled 99.9 22 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 33 d1vk3a3 not modelled 99.9 14 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 34 d1t3ta6 not modelled 99.9 12 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 35 d1vk3a1 not modelled 99.8 20 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 36 d1t3ta7 not modelled 99.7 20 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 37 d1t3ta4 not modelled 99.3 22 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 38 d1t3ta5 not modelled 99.1 18 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 39 d3dhxa1 not modelled 85.2 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 40 d1to3a_ not modelled 80.2 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 41 c3jrkG_ not modelled 77.3 11 PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes 42 c3qi7A_ not modelled 74.3 17 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 43 d2qrra1 not modelled 61.4 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 44 c3fokH_ not modelled 55.0 11 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115 45 d1j2oa1 not modelled 50.6 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 46 d1m3va1 not modelled 37.0 60 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 47 c2a2cA_ not modelled 36.2 14 PDB header:transferase Chain: A: PDB Molecule:n-acetylgalactosamine kinase; PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate 48 d1ujda_ not modelled 35.8 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 49 d1oi7a1 not modelled 34.0 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 50 d1wf8a1 not modelled 31.9 11 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 51 c3eggC_ not modelled 31.8 14 PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin 52 d1ihja_ not modelled 29.9 14 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 53 d2byga1 not modelled 29.2 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 54 c2dmzA_ not modelled 28.0 20 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the third pdz domain of human inad-2 like protein 55 c3hmuA_ not modelled 27.5 13 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi 56 c3shwA_ not modelled 26.9 19 PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide 57 c2jreA_ not modelled 26.5 16 PDB header:de novo protein Chain: A: PDB Molecule:c60-1 pdz domain peptide; PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis 58 d1ep3b1 not modelled 26.2 39 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 59 d1x5qa1 not modelled 25.9 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 60 c2qjhH_ not modelled 25.8 19 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 61 d1fnda1 not modelled 25.4 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 62 c2cjdA_ not modelled 23.9 20 PDB header:transferase Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase; PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form 63 d2csua1 not modelled 23.4 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 64 c1v9fA_ not modelled 22.7 14 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 65 d1v9fa_ not modelled 22.7 14 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 66 d2fe5a1 not modelled 22.6 23 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 67 d1whaa_ not modelled 22.5 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 68 d2bmwa1 not modelled 22.1 27 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 69 c2dnrA_ not modelled 21.8 11 PDB header:rna binding protein Chain: A: PDB Molecule:synaptojanin-1; PDBTitle: solution structure of rna binding domain in synaptojanin 1 70 d2qswa1 not modelled 21.4 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like 71 d1gawa1 not modelled 21.3 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 72 d1jyea_ not modelled 20.9 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 73 c1jyeA_ not modelled 20.9 9 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 74 c2djtA_ not modelled 20.6 18 PDB header:signaling protein Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structures of the pdz domain of human unnamed2 protein product 75 d1wfga_ not modelled 19.2 15 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 76 d1wh1a_ not modelled 19.1 8 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 77 d1pcaa1 not modelled 18.9 24 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 78 d2f0aa1 not modelled 18.9 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 79 d1o6xa_ not modelled 18.7 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 80 d1guda_ not modelled 18.4 14 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 81 c3cs3A_ not modelled 18.2 11 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 82 d1rgra_ not modelled 17.9 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 83 d2boaa2 not modelled 17.6 16 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 84 d1krha1 not modelled 17.2 44 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 85 d1kwma2 not modelled 17.1 12 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 86 c3l49D_ not modelled 17.0 6 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 87 c2jikB_ not modelled 16.9 18 PDB header:membrane protein Chain: B: PDB Molecule:synaptojanin-2 binding protein; PDBTitle: crystal structure of pdz domain of synaptojanin-2 binding2 protein 88 d1pyta_ not modelled 16.7 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 89 d1ayea2 not modelled 16.6 20 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 90 c2vk2A_ not modelled 16.6 12 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 91 d1tvca1 not modelled 16.5 38 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 92 d1udxa3 not modelled 16.5 14 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 93 c2jilA_ not modelled 16.4 25 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1) 94 c2zplA_ not modelled 16.3 17 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain a 95 c2fneB_ not modelled 16.0 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 13th pdz domain of mpdz 96 c3bblA_ not modelled 15.9 5 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 97 c3n5mD_ not modelled 15.8 18 PDB header:transferase Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystals structure of a bacillus anthracis aminotransferase 98 c3d8uA_ not modelled 15.8 21 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 99 d1nsaa2 not modelled 15.3 12 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0