Email l.a.kelley@imperial.ac.uk Description P36661 Date Thu Jan 5 11:53:33 GMT 2012 Unique Job ID 20c5f8f862434c9d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pfyA_ 93.3 26 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 2 c2zfyA_ 80.8 31 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otub1; PDBTitle: crystal structure of human otubain 1 3 c3c0rC_ 80.5 47 PDB header:cell cycle, hydrolase Chain: C: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: structure of ovarian tumor (otu) domain in complex with ubiquitin 4 c3pt2A_ 72.8 27 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:rna polymerase; PDBTitle: structure of a viral otu domain protease bound to ubiquitin 5 d1tffa_ 69.4 31 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Ubiquitin thiolesterase protein OTUB2 (Otubain-2) 6 d2d32a1 51.7 31 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamate-cysteine ligase 7 c3i7fA_ 41.2 19 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 8 c1u9pA_ 39.3 25 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 9 c1asyA_ 36.1 19 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 10 c3m4qA_ 35.9 19 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 11 d1mnta_ 27.8 27 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 12 c1b8aB_ 23.7 15 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 13 c3ln7A_ 23.4 32 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida 14 d1ppjw_ 20.5 60 Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 15 d1ppjj_ 19.0 60 Fold:Single transmembrane helix Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 16 d2outa1 17.3 43 Fold:LEM/SAP HeH motif Superfamily:Rho N-terminal domain-like Family:YqbF C-terminal domain-like 17 c3ln6A_ 16.6 33 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 streptococcus agalactiae 18 d2gp4a1 16.1 38 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 19 c2vfjA_ 16.1 46 PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor; PDBTitle: structure of the a20 ovarian tumour (otu) domain 20 d1y1oa_ 16.0 46 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:RecU-like 21 c1y1oC_ not modelled 16.0 46 PDB header:recombination Chain: C: PDB Molecule:penicillin-binding protein-related factor a; PDBTitle: x-ray crystal structure of penicillin-binding protein-2 related factor a from bacillus stearothermophilus 22 c3dkbA_ not modelled 15.9 46 PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3; PDBTitle: crystal structure of a20, 2.5 angstrom 23 c3c0mB_ not modelled 13.6 28 PDB header:toxin Chain: B: PDB Molecule:aerolysin; PDBTitle: crystal structure of the proaerolysin mutant y221g 24 d1thqa_ not modelled 11.8 45 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane enzyme PagP 25 d1sg7a1 not modelled 11.6 47 Fold:ChaB-like Superfamily:ChaB-like Family:ChaB-like 26 c1sg7A_ not modelled 11.6 47 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cation transport regulator chab; PDBTitle: nmr solution structure of the putative cation transport2 regulator chab 27 d1r4xa2 not modelled 11.6 24 Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Coatomer appendage domain 28 c2xgtB_ not modelled 10.9 29 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 29 c3oakC_ not modelled 10.8 86 PDB header:transcription Chain: C: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex 30 d2ftxb1 not modelled 10.3 28 Fold:Kinetochore globular domain-like Superfamily:Kinetochore globular domain Family:Spc24-like 31 c2fv4B_ not modelled 10.2 28 PDB header:structural protein, protein binding Chain: B: PDB Molecule:hypothetical 24.6 kda protein in ilv2-ade17 PDBTitle: nmr solution structure of the yeast kinetochore spc24/spc252 globular domain 32 c2vxdA_ not modelled 9.8 11 PDB header:nuclear protein Chain: A: PDB Molecule:nucleophosmin; PDBTitle: the structure of the c-terminal domain of nucleophosmin 33 c1ykuB_ not modelled 9.8 19 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog 34 c2rodB_ not modelled 9.6 53 PDB header:apoptosis Chain: B: PDB Molecule:noxa; PDBTitle: solution structure of mcl-1 complexed with noxaa 35 c1e22A_ not modelled 9.5 21 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 36 d2cura2 not modelled 9.5 100 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 37 c2yfvC_ not modelled 9.3 33 PDB header:cell cycle Chain: C: PDB Molecule:scm3; PDBTitle: the heterotrimeric complex of kluyveromyces lactis scm3, cse4 and h4 38 c1p5kA_ not modelled 9.3 64 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution ser to leu11 modification in sds-d252 micelles 39 c2jwnB_ not modelled 8.4 34 PDB header:rna binding protein Chain: B: PDB Molecule:embryonic polyadenylate-binding protein 2-b; PDBTitle: solution nmr structure of the protease-resistent domain of2 xenopus laevis epabp2 40 c2npiB_ not modelled 8.2 26 PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex 41 c3nztA_ not modelled 8.1 27 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: 2.0 angstrom crystal structure of glutamate--cysteine ligase (gsha)2 ftom francisella tularensis in complex with amp 42 d2d8za1 not modelled 7.7 67 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 43 c2lc0A_ not modelled 7.6 18 PDB header:protein binding Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: rv0020c_nter structure 44 c3bjuB_ not modelled 7.6 24 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 45 d1o57a1 not modelled 7.6 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR 46 c1sfcD_ not modelled 7.5 20 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 47 c2v4oB_ not modelled 6.9 46 PDB header:hydrolase Chain: B: PDB Molecule:multifunctional protein sur e; PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form 48 d2i9fa1 not modelled 6.9 44 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein 49 c2gloA_ not modelled 6.9 32 PDB header:transcription/dna Chain: A: PDB Molecule:brinker cg9653-pa; PDBTitle: solution structure of the brinker dna binding domain in2 complex with the omb enhancer 50 c2yv5A_ not modelled 6.9 16 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 51 c3c2vA_ not modelled 6.7 20 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of the quinolinate phosphoribosyl2 transferase (bna6) from saccharomyces cerevisiae complexed3 with prpp and the inhibitor phthalate 52 c2f0cC_ not modelled 6.7 28 PDB header:virus/viral protein Chain: C: PDB Molecule:phage tp901-1 orf49 (bpp); PDBTitle: structure of the receptor binding protein (orf49, bbp) from lactophage2 tp901-1 53 c1wydB_ not modelled 6.6 23 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 54 c1aq5C_ not modelled 6.4 58 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 55 c1x55A_ not modelled 6.4 21 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 56 c3e9hB_ not modelled 6.3 18 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 57 d2enga_ not modelled 6.2 38 Fold:Double psi beta-barrel Superfamily:Barwin-like endoglucanases Family:Eng V-like 58 d1eova2 not modelled 6.1 18 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 59 d1f0la3 not modelled 6.0 25 Fold:Toxins' membrane translocation domains Superfamily:Diphtheria toxin, middle domain Family:Diphtheria toxin, middle domain 60 d2duca1 not modelled 5.8 26 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 61 c2i8bB_ not modelled 5.8 30 PDB header:viral protein Chain: B: PDB Molecule:minor nucleoprotein vp30; PDBTitle: crystal structure of the c-terminal domain of ebola virus vp30 62 d2al6a2 not modelled 5.7 83 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 63 d2cs7a1 not modelled 5.6 24 Fold:IL8-like Superfamily:PhtA domain-like Family:PhtA domain-like 64 c1p5lA_ not modelled 5.6 64 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution phe5 to ser modification in sds-d252 micelles 65 c1p0gA_ not modelled 5.4 64 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: structure of antimicrobial peptide, hp (2-20) and its2 analogues derived from helicobacter pylori, as determined3 by 1h nmr spectroscopy 66 c2e6gI_ not modelled 5.4 31 PDB header:hydrolase Chain: I: PDB Molecule:5'-nucleotidase sure; PDBTitle: crystal structure of the stationary phase survival protein sure from2 thermus thermophilus hb8 in complex with phosphate 67 c3pmdA_ not modelled 5.2 24 PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis 68 d2saka_ not modelled 5.1 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Staphylokinase/streptokinase Family:Staphylokinase/streptokinase