Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP15286
DateThu Jan 5 11:34:44 GMT 2012
Unique Job ID1d0d32595f333785

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3chtA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand
Confidence and coverage
Confidence: 48.4% Coverage: 17%
56 residues ( 17% of your sequence) have been modelled with 48.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIR
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Disorder  ??????????????????????????


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????
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   .........70.........80.........90.........100.........110.........120
Sequence  HDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYI
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Disorder 






?????
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??????







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   .........130.........140.........150.........160.........170.........180
Sequence  RHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLA
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??

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?????????????????
















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   .........190.........200.........210.........220.........230.........240
Sequence  AATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLK
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?

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????????






??
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   .........250.........260.........270.........280.........290.........300
Sequence  QPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDPRVMQPLLNPFP
Secondary structure 






















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Disorder  ????















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   .........310.........320.........330.
Sequence  PMMDTLQNMATRPALWILLVAIILMLVWLVR
Secondary structure 






SS confidence 






























Disorder  ?





???


















??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3cht chain A

3D model

Region: 29 - 84
Aligned: 56
Modelled: 56
Confidence: 48.4%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand

Phyre2

PDB 3gzx chain B

3D model

Region: 18 - 62
Aligned: 45
Modelled: 45
Confidence: 47.9%
Identity: 13%
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356

Phyre2

PDB 1ktd chain B domain 2

3D model

Region: 110 - 125
Aligned: 16
Modelled: 16
Confidence: 41.7%
Identity: 31%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1i3r chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 40.0%
Identity: 38%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1klu chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 38.4%
Identity: 62%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 2pxy chain D domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 38.4%
Identity: 23%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 2iad chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 37.2%
Identity: 38%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1d5m chain B domain 2

3D model

Region: 110 - 125
Aligned: 16
Modelled: 16
Confidence: 36.7%
Identity: 50%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1iak chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 36.4%
Identity: 31%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1bx2 chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 36.1%
Identity: 62%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1fv1 chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 34.2%
Identity: 62%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1s9v chain B domain 2

3D model

Region: 110 - 125
Aligned: 16
Modelled: 16
Confidence: 33.8%
Identity: 38%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1uvq chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 32.8%
Identity: 31%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 3c5z chain D domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 32.7%
Identity: 31%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1muj chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 32.7%
Identity: 31%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 2nna chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 32.4%
Identity: 31%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1es0 chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 32.1%
Identity: 31%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1fng chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 32.0%
Identity: 38%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2

PDB 1dd4 chain C

3D model

Region: 35 - 67
Aligned: 33
Modelled: 33
Confidence: 30.1%
Identity: 18%
Fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain

Phyre2

PDB 1a6a chain B domain 2

3D model

Region: 113 - 125
Aligned: 13
Modelled: 13
Confidence: 28.8%
Identity: 54%
Fold: MHC antigen-recognition domain
Superfamily: MHC antigen-recognition domain
Family: MHC antigen-recognition domain

Phyre2
1

c3chtA_
2

c3gzxB_
3

d1ktdb2
4

d1i3rb2
5

d1klub2
6

d2pxyd2
7

d2iadb2
8

d1d5mb2
9

d1iakb2
10

d1bx2b2
11

d1fv1b2
12

d1s9vb2
13

d1uvqb2
14

d3c5zd2
15

d1mujb2
16

d2nnab2
17

d1es0b2
18

d1fngb2
19

d1dd4c_
20

d1a6ab2
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3chtA_



48.4 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand
2c3gzxB_



47.9 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
3d1ktdb2



41.7 31 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
4d1i3rb2



40.0 38 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
5d1klub2



38.4 62 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
6d2pxyd2



38.4 23 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
7d2iadb2



37.2 38 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
8d1d5mb2



36.7 50 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
9d1iakb2



36.4 31 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
10d1bx2b2



36.1 62 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
11d1fv1b2



34.2 62 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
12d1s9vb2



33.8 38 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
13d1uvqb2



32.8 31 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
14d3c5zd2



32.7 31 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
15d1mujb2



32.7 31 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
16d2nnab2



32.4 31 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
17d1es0b2



32.1 31 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
18d1fngb2



32.0 38 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
19d1dd4c_



30.1 18 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
20d1a6ab2



28.8 54 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
21d1w7ca2



not modelled 27.4 17 Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
22d1ulib_



not modelled 23.6 14 Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
23d1z3xa1



not modelled 22.5 19 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:GUN4-associated domain
24c2gbxF_



not modelled 21.5 14 PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
25d1kkxa_



not modelled 20.4 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
26c1dd3C_



not modelled 19.7 19 PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima
27c1dd3D_



not modelled 19.7 19 PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima
28d1dd4d_



not modelled 19.0 19 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
29d1g4ma1



not modelled 18.8 24 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Arrestin/Vps26-like
30c2ib1A_



not modelled 18.7 15 PDB header:apoptosis
Chain: A: PDB Molecule:death domain containing membrane protein nradd;
PDBTitle: solution structure of p45 death domain
31c2kkvA_



not modelled 17.9 17 PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h
32c2hl7A_



not modelled 17.7 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
33c2k9sA_



not modelled 17.2 17 PDB header:transcription
Chain: A: PDB Molecule:arabinose operon regulatory protein;
PDBTitle: solution structure of dna binding domain of e. coli arac
34c2kj8A_



not modelled 16.9 16 PDB header:dna binding protein
Chain: A: PDB Molecule:putative prophage cps-53 integrase;
PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2
35c1nohB_



not modelled 16.5 27 PDB header:viral protein
Chain: B: PDB Molecule:head morphogenesis protein;
PDBTitle: the structure of bacteriophage phi29 scaffolding protein2 gp7 after prohead assembly
36d2coba1



not modelled 16.5 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
37c1bl0A_



not modelled 16.4 14 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein);
PDBTitle: multiple antibiotic resistance protein (mara)/dna complex
38c2lboA_



not modelled 16.1 25 PDB header:cell adhesion
Chain: A: PDB Molecule:microneme protein 3;
PDBTitle: eimeria tenella microneme protein 3 mar_b domain
39c2kkpA_



not modelled 15.5 16 PDB header:dna binding protein
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171).
40c2wx3A_



not modelled 14.8 46 PDB header:structural protein
Chain: A: PDB Molecule:mrna-decapping enzyme 1a;
PDBTitle: asymmetric trimer of the human dcp1a c-terminal domain
41c3lysC_



not modelled 13.7 8 PDB header:recombination
Chain: C: PDB Molecule:prophage pi2 protein 01, integrase;
PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f
42d2g2ub1



not modelled 13.7 25 Fold:BLIP-like
Superfamily:beta-lactamase-inhibitor protein, BLIP
Family:beta-lactamase-inhibitor protein, BLIP
43c2kw0A_



not modelled 13.6 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
44c1giyJ_



not modelled 13.2 20 PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix
45c3ahrA_



not modelled 13.2 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:ero1-like protein alpha;
PDBTitle: inactive human ero1
46c2khqA_



not modelled 12.8 11 PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b
47c3oa8B_



not modelled 12.7 19 PDB header:heme-binding protein/heme-binding protei
Chain: B: PDB Molecule:soxx;
PDBTitle: diheme soxax
48c3ol4B_



not modelled 12.6 27 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
49c3btpA_



not modelled 12.5 25 PDB header:dna binding protein, chaperone
Chain: A: PDB Molecule:single-strand dna-binding protein;
PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding
50d1usta_



not modelled 12.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Linker histone H1/H5
51c2kj5A_



not modelled 11.9 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of a domain from a putative phage2 integrase protein nmul_a0064 from nitrosospira multiformis,3 northeast structural genomics consortium target nmr46c
52c2kj9A_



not modelled 11.9 11 PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: nmr structure of intb phage-integrase-like protein fragment2 90-199 from erwinia carotova subsp. atroseptica: northeast3 structural genomics consortium target ewr217e
53c2nyxB_



not modelled 11.7 36 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
54c2noxP_



not modelled 11.7 19 PDB header:oxidoreductase
Chain: P: PDB Molecule:tryptophan 2,3-dioxygenase;
PDBTitle: crystal structure of tryptophan 2,3-dioxygenase from ralstonia2 metallidurans
55d3ebya1



not modelled 11.6 14 Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
56c2dxbR_



not modelled 11.5 26 PDB header:hydrolase
Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma;
PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers
57c3pstA_



not modelled 11.4 27 PDB header:nuclear protein
Chain: A: PDB Molecule:protein doa1;
PDBTitle: crystal structure of pul and pfu(mutate) domain
58c2ee7A_



not modelled 11.0 11 PDB header:structural protein
Chain: A: PDB Molecule:sperm flagellar protein 1;
PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1
59c2d96A_



not modelled 10.8 19 PDB header:transcription
Chain: A: PDB Molecule:nuclear factor nf-kappa-b p100 subunit;
PDBTitle: solution structure of the death domain of nuclear factor nf-2 kappa-b p100
60d1uzxa_



not modelled 10.8 25 Fold:UBC-like
Superfamily:UBC-like
Family:UEV domain
61c3m5bA_



not modelled 10.7 10 PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: crystal structure of the btb domain from fazf/zbtb32
62c2z3xC_



not modelled 10.4 29 PDB header:dna binding protein/dna
Chain: C: PDB Molecule:small, acid-soluble spore protein c;
PDBTitle: structure of a protein-dna complex essential for dna2 protection in spore of bacillus species
63d1dd3a1



not modelled 10.3 20 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
64c2ld7A_



not modelled 10.0 24 PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase complex subunit sap30;
PDBTitle: solution structure of the msin3a pah3-sap30 sid complex
65d1iufa1



not modelled 9.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
66d1ig6a_



not modelled 9.9 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
67c2jhdA_



not modelled 9.7 11 PDB header:cell adhesion
Chain: A: PDB Molecule:micronemal protein 1;
PDBTitle: crystal structure of toxoplasma gondii micronemal protein 12 bound to 3'-sialyl-n-acetyllactosamine
68d1s7oa_



not modelled 9.3 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
69c2jxjA_



not modelled 9.2 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:histone demethylase jarid1a;
PDBTitle: nmr structure of the arid domain from the histone h3k42 demethylase rbp2
70c2khvA_



not modelled 8.9 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b.
71d1h9xa1



not modelled 8.7 28 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
72c3lsgD_



not modelled 8.6 14 PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586
73c3oioA_



not modelled 8.6 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain-
PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum
74c2krfB_



not modelled 8.5 10 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
75d1zu1a1



not modelled 8.5 14 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
76d2b1xb1



not modelled 8.5 7 Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
77d1hlma_



not modelled 8.4 14 Fold:Globin-like
Superfamily:Globin-like
Family:Globins
78c2ou2A_



not modelled 8.4 15 PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase htatip;
PDBTitle: acetyltransferase domain of human hiv-1 tat interacting2 protein, 60kda, isoform 3
79c2jnsA_



not modelled 8.4 13 PDB header:unknown function
Chain: A: PDB Molecule:bromodomain-containing protein 4;
PDBTitle: solution structure of the bromodomain-containing protein 42 et domain
80d1dzfa1



not modelled 8.4 9 Fold:Restriction endonuclease-like
Superfamily:Eukaryotic RPB5 N-terminal domain
Family:Eukaryotic RPB5 N-terminal domain
81d1wqlb1



not modelled 8.3 18 Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
82d2ozua1



not modelled 8.2 21 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
83c2ys9A_



not modelled 8.2 28 PDB header:transcription
Chain: A: PDB Molecule:homeobox and leucine zipper protein homez;
PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
84d1yqaa1



not modelled 8.1 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Linker histone H1/H5
85d1kv9a1



not modelled 8.1 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
86d1ijwc_



not modelled 8.1 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
87c3h9xB_



not modelled 8.0 29 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein pspto_3016;
PDBTitle: crystal structure of the pspto_3016 protein from2 pseudomonas syringae, northeast structural genomics3 consortium target psr293
88c2obuA_



not modelled 7.8 28 PDB header:hormone/growth factor
Chain: A: PDB Molecule:gastric inhibitory polypeptide;
PDBTitle: solution structure of gip in tfe/water
89c3ixzA_



not modelled 7.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:potassium-transporting atpase alpha;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
90c3l3fX_



not modelled 7.8 39 PDB header:protein binding
Chain: X: PDB Molecule:protein doa1;
PDBTitle: crystal structure of a pfu-pul domain pair of saccharomyces cerevisiae2 doa1/ufd3
91d3ejva1



not modelled 7.7 9 Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
92c1iijA_



not modelled 7.7 33 PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
93d1eb7a2



not modelled 7.5 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
94d1wmga_



not modelled 7.4 11 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
95c2kw7A_



not modelled 7.3 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: solution nmr structure of the n-terminal domain of protein pg_03612 from p.gingivalis, northeast structural genomics consortium target3 pgr37a
96c2c1dB_



not modelled 7.3 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:soxx;
PDBTitle: crystal structure of soxxa from p. pantotrophus
97d3e99a1



not modelled 7.2 7 Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
98c2eqxA_



not modelled 7.2 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kelch repeat and btb domain-containing protein 4;
PDBTitle: solution structure of the back domain of kelch repeat and2 btb domain-containing protein 4
99d1hcra_



not modelled 7.0 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0