Email l.a.kelley@imperial.ac.uk Description P28306 Date Wed Jan 25 15:20:47 GMT 2012 Unique Job ID 1cb4d13787e39254

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2r1fB_ 100.0 97 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:predicted aminodeoxychorismate lyase; PDBTitle: crystal structure of predicted aminodeoxychorismate lyase from2 escherichia coli 2 d3bz6a1 45.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PSPTO2686-like 3 c2v3sB_ 44.5 7 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase osr1; PDBTitle: structural insights into the recognition of substrates and2 activators by the osr1 kinase 4 d1l0wa2 38.3 29 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 5 d1gjja2 36.9 25 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 6 c3r85E_ 34.5 40 PDB header:apoptosis Chain: E: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 7 d1eg7a_ 34.4 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 8 d1h9fa_ 33.9 21 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 9 d1ztwa1 33.3 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 10 c3bz6A_ 33.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0502 protein pspto_2686; PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000 11 d1jeia_ 32.5 29 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 12 c3r85G_ 32.1 40 PDB header:apoptosis Chain: G: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 13 d1e0ga_ 29.6 10 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 14 d2fug13 26.9 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Nqo1 middle domain-like Family:Nqo1 middle domain-like 15 c2exuA_ 26.7 20 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 16 c3do6B_ 26.2 29 PDB header:ligase Chain: B: PDB Molecule:formate--tetrahydrofolate ligase; PDBTitle: crystal structure of putative formyltetrahydrofolate2 synthetase (tm1766) from thermotoga maritima at 1.85 a3 resolution 17 c3r85F_ 26.2 41 PDB header:apoptosis Chain: F: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 18 c1gjjA_ 25.8 57 PDB header:membrane protein Chain: A: PDB Molecule:lap2; PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2 19 c3lk2B_ 25.2 16 PDB header:protein binding Chain: B: PDB Molecule:f-actin-capping protein subunit beta isoforms 1 and 2; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil 20 c3f1iH_ 24.6 30 PDB header:protein binding Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: human escrt-0 core complex 21 c2zktB_ not modelled 23.7 19 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 22 d1wxqa2 not modelled 23.1 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 23 c2dhkA_ not modelled 20.6 8 PDB header:immune system Chain: A: PDB Molecule:tbc1 domain family member 2; PDBTitle: solution structure of the ph domain of tbc1 domain family2 member 2 protein from human 24 c3r85H_ not modelled 18.8 39 PDB header:apoptosis Chain: H: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl 25 c3lwfD_ not modelled 18.3 15 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 26 c2yztA_ not modelled 17.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 27 d2zd1b1 not modelled 16.1 15 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 28 c3fwlA_ not modelled 15.9 11 PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli 29 d1hara_ not modelled 14.2 15 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 30 d2ysca1 not modelled 13.8 100 Fold:WW domain-like Superfamily:WW domain Family:WW domain 31 d1nr6a_ not modelled 12.8 56 Fold:Cytochrome P450 Superfamily:Cytochrome P450 Family:Cytochrome P450 32 c3e4eA_ not modelled 11.8 56 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome p450 2e1; PDBTitle: human cytochrome p450 2e1 in complex with the inhibitor 4-2 methylpyrazole 33 d1dt9a3 not modelled 10.9 9 Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 34 c2k9xA_ not modelled 10.7 14 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 35 d1oq1a_ not modelled 10.4 41 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Hypothetical protein YesU 36 c2h8kA_ not modelled 10.4 14 PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap 37 c2ps3A_ not modelled 9.9 7 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 38 d1ujpa_ not modelled 9.5 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 39 c3ed4A_ not modelled 9.5 23 PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli 40 c1ezjA_ not modelled 9.5 12 PDB header:viral protein, transferase Chain: A: PDB Molecule:nucleocapsid phosphoprotein; PDBTitle: crystal structure of the multimerization domain of the phosphoprotein2 from sendai virus 41 d1plsa_ not modelled 9.5 21 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 42 c1d0rA_ not modelled 9.2 13 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 43 c2qieB_ not modelled 9.2 12 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 44 c1us7B_ not modelled 9.2 14 PDB header:chaperone Chain: B: PDB Molecule:hsp90 co-chaperone cdc37; PDBTitle: complex of hsp90 and p50 45 d1us7b_ not modelled 9.2 14 Fold:Hsp90 co-chaperone CDC37 Superfamily:Hsp90 co-chaperone CDC37 Family:Hsp90 co-chaperone CDC37 46 d1vjka_ not modelled 8.8 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 47 c3f5fA_ not modelled 8.7 14 PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. 48 d1rd5a_ not modelled 8.6 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 49 c3b5qB_ not modelled 8.5 18 PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution 50 c3s2wB_ not modelled 8.5 7 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1 51 d1c0aa2 not modelled 8.4 13 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 52 d1seia_ not modelled 8.3 10 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 53 c3szzA_ not modelled 8.3 15 PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate 54 c3po0A_ not modelled 8.2 4 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 55 c3ebsA_ not modelled 8.1 56 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome p450 2a6; PDBTitle: human cytochrome p450 2a6 i208s/i300f/g301a/s369g in complex2 with phenacetin 56 c3lggA_ not modelled 8.1 14 PDB header:hydrolase Chain: A: PDB Molecule:adenosine deaminase cecr1; PDBTitle: crystal structure of human adenosine deaminase growth factor,2 adenosine deaminase type 2 (ada2) complexed with transition state3 analogue, coformycin 57 c3jviA_ not modelled 8.1 19 PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica 58 c3bbnH_ not modelled 8.0 8 PDB header:ribosome Chain: H: PDB Molecule:ribosomal protein s8; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 59 c2ogwB_ not modelled 7.9 7 PDB header:transport protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua PDBTitle: structure of abc type zinc transporter from e. coli 60 d1a9xa1 not modelled 7.8 42 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 61 c3e20C_ not modelled 7.7 15 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 62 c2qzuA_ not modelled 7.7 13 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 63 d2joya1 not modelled 7.5 8 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 64 c2uzhB_ not modelled 7.5 7 PDB header:lyase Chain: B: PDB Molecule:2c-methyl-d-erythritol 2,4-cyclodiphosphate PDBTitle: mycobacterium smegmatis 2c-methyl-d-erythritol-2,4-2 cyclodiphosphate synthase (ispf) 65 d1gx1a_ not modelled 7.5 23 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 66 c3thaB_ not modelled 7.4 15 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. 67 c2dt7A_ not modelled 7.4 67 PDB header:rna binding protein Chain: A: PDB Molecule:splicing factor 3a subunit 3; PDBTitle: solution structure of the second surp domain of human2 splicing factor sf3a120 in complex with a fragment of3 human splicing factor sf3a60 68 c2jugB_ not modelled 7.3 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:tubc protein; PDBTitle: multienzyme docking in hybrid megasynthetases 69 d2ouxa2 not modelled 7.3 4 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 70 d1i94h_ not modelled 7.2 8 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 71 c2e0yB_ not modelled 7.2 19 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli 72 c2c1tC_ not modelled 7.0 35 PDB header:protein transport/membrane protein Chain: C: PDB Molecule:nucleoporin nup2; PDBTitle: structure of the kap60p:nup2 complex 73 c2yvsA_ not modelled 7.0 8 PDB header:oxidoreductase Chain: A: PDB Molecule:glycolate oxidase subunit glce; PDBTitle: crystal structure of glycolate oxidase subunit glce from thermus2 thermophilus hb8 74 d1s6la1 not modelled 6.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 75 c2pmpA_ not modelled 6.9 23 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana 76 c2o1eB_ not modelled 6.8 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 77 c3f0gA_ not modelled 6.7 21 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp 78 c2nqoB_ not modelled 6.6 25 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase 79 d1iuga_ not modelled 6.6 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 80 d1ecfa1 not modelled 6.6 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 81 d1gph11 not modelled 6.5 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 82 c2iirJ_ not modelled 6.4 16 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 83 d1an7a_ not modelled 6.4 8 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 84 c2j98A_ not modelled 6.4 100 PDB header:rna-binding protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: human coronavirus 229e non structural protein 9 cys69ala2 mutant (nsp9) 85 c1w9qB_ not modelled 6.3 3 PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide 86 d2nnja1 not modelled 6.3 56 Fold:Cytochrome P450 Superfamily:Cytochrome P450 Family:Cytochrome P450 87 c3izcN_ not modelled 6.2 16 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 88 d1a6qa1 not modelled 6.0 71 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 89 d1i6ua_ not modelled 6.0 4 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 90 c3cqxD_ not modelled 5.9 33 PDB header:chaperone Chain: D: PDB Molecule:bag family molecular chaperone regulator 2; PDBTitle: chaperone complex 91 c3lp9C_ not modelled 5.9 27 PDB header:plant protein Chain: C: PDB Molecule:ls-24; PDBTitle: crystal structure of ls24, a seed albumin from lathyrus2 sativus 92 c2vqrA_ not modelled 5.8 13 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily 93 c3iz5N_ not modelled 5.8 8 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 94 d2gy9h1 not modelled 5.7 16 Fold:Ribosomal protein S8 Superfamily:Ribosomal protein S8 Family:Ribosomal protein S8 95 d1b74a1 not modelled 5.7 15 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 96 d1okra_ not modelled 5.7 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 97 c2b5dX_ not modelled 5.6 8 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima 98 d1iv3a_ not modelled 5.6 21 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 99 d2crfa1 not modelled 5.5 8 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Ran-binding domain