Job Description P37648 Confidence 100.00% Date Thu Jan 5 11:56:20 GMT 2012 Rank 15 Aligned Residues 397 % Identity 11% Template c1l0lB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase complex core protein 2; PDBTitle: structure of bovine mitochondrial cytochrome bc1 complex with a bound2 fungicide famoxadone Resolution 2.35 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	D	P	A	W	Q	Q	G	T	L	S	N	G	L	Q	W	Q	V	L	T	T	P	Q	R	P	S	D	R	V	E	I	R	L	L	V	N	T	G	S	L	A	E	S	T	Q	Q	S	G	Y	S	H	A	I	P	R	I	A	L	T	Q	S	G	G	L	D	A	A	Q	A	R	S	L	W	Q	Q	G	I	D	P
Query Conservation
Alig confidence																									.				.	.																																																.	.	.	.
Template Conservation																									.				.	.																																																.	.	.	.
Template Sequence		P	H	P	Q	D	L	E	F	T	R	L	P	N	G	L	V	I	A	S	L	E	N	Y	.	A	P	A	.	.	S	R	I	G	L	F	I	K	A	G	S	R	Y	E	N	S	N	N	L	G	T	S	H	L	L	R	L	A	S	S	L	T	T	K	G	A	S	S	F	K	I	T	R	G	I	E	A	.	.	.	.
Template Known Secondary structure													T	T	S										.		S		.	.								S		S	G	G	G			T	T	S	T	T								T	T	T	S		B	T	T	B												.	.	.	.
Template Predicted Secondary structure																									.				.	.																																																.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		K	R	P	M	P	P	V	I	V	S	Y	D	T	T	L	F	N	L	S	L	P	N	N	R	N	D	L	L	K	E	A	L	S	Y	L	A	N	A	T	G	K	L	T	I	T	P	E	T	I	N	H	A	L	Q	S	Q	D	M	V	A	T	W	P	A	D	T	K	E	G	W	W	.	.	.	.	R	Y	R	L	K
Query Conservation																																																																									.	.	.	.
Alig confidence																							.	.	.																																																.	.	.	.
Template Conservation																							.	.	.
Template Sequence		V	G	G	K	L	S	V	T	S	T	R	E	N	M	A	Y	T	V	E	C	L	.	.	.	R	D	D	V	D	I	L	M	E	F	L	L	N	V	T	T	A	P	E	F	R	R	W	E	V	A	A	L	Q	P	Q	L	R	I	D	K	A	V	A	L	Q	N	P	Q	A	H	V	I	E	N	L	H	A	A	A	Y
Template Known Secondary structure		T	T									S	S										.	.	.	G	G	G															B																						T	T	S														B
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		G	S	T	L	L	G	H	D	P	A	D	P	L	K	.	.	Q	P	V	E	A	E	K	I	K	D	F	Y	Q	K	W	Y	T	P	D	A	M	T	L	L	V	V	G	N	V	D	A	R	S	V	V	D	Q	I	N	K	T	F	G	E	L	K	G	K	R	E	T	P	A	P	V	P	T	L	S	P	L	R	A	E
Query Conservation																.	.
Alig confidence					.											.	.																													.																				.	.	.	.	.
Template Conservation					.																																									.																				.	.	.	.	.
Template Sequence		R	N	A	.	L	A	N	S	L	Y	C	P	D	Y	R	I	G	K	V	T	P	V	E	L	H	D	Y	V	Q	N	H	F	T	S	A	R	M	A	L	I	G	L	G	V	.	S	H	P	V	L	K	Q	V	A	E	Q	F	L	N	I	R	G	G	L	.	.	.	.	.	G	L	S	G	A	K	A	K	Y	H	G
Template Known Secondary structure		S	S	G	.	G	G	S		S	S			G	G	G	T	T	T														S	S	G	G	G							S	S	.																		S		.	.	.	.	.		S		T	T				B
Template Predicted Secondary structure					.																																									.																				.	.	.	.	.
Template SS confidence
		169	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230						.	.	.	.	.	.	.	.	.	240	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.									.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		A	V	S	I	M	T	D	A	V	R	Q	D	R	L	S	I	M	W	D	T	P	W	Q	P	I	R	E	S	A	A	L	L	R	Y	W	R	A	D	L	A	R	E	A	L	.	.	.	.	.	.	.	.	F	W	H	V	Q	Q	A	L	S	A	S	N	S	K	D	I	G	L	G	F	D	C	R	V	L	Y	L	R
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence																									.	.																				.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		G	E	I	R	E	Q	N	G	D	S	L	V	H	A	A	L	V	A	E	S	A	A	I	.	.	G	S	A	E	A	N	A	F	S	V	L	Q	H	V	L	G	A	G	P	H	V	K	R	G	S	N	A	T	S	S	L	Y	Q	A	V	A	K	G	V	H	Q	P	F	D	V	S	A	F	N	A	S	Y	S	D	S
Template Known Secondary structure											S													T	.	.	T	S																S		S	S	T	T				T	T													S	S											S	S
Template Predicted Secondary structure																									.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	C	A	I	N	I	E	S	P	N	D	K	L	N	S	N	L	N	L	V	A	R	E	L	A	K	V	R	D	K	G	L	P	E	E	E	F	N	A	L	V	A	Q	K	K	L	E	L	Q	K	L	F	A	A	Y	A	R	A	D	T	D	I	L	M	G	Q	R	M	R	S	L	Q	N	Q	V	V	D	I	A
Query Conservation
Alig confidence																																																							.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		G	L	F	G	F	Y	T	I	S	Q	A	A	S	A	G	D	V	I	K	A	A	Y	N	Q	V	K	T	I	A	Q	G	N	L	S	N	P	D	V	Q	A	A	K	N	K	L	K	A	G	Y	L	M	S	V	.	.	.	.	.	E	S	S	E	G	F	L	D	E	V	G	S	Q	A	L	A	A	G	S	Y	T	P
Template Known Secondary structure												G	G	G																	T	T																						T	.	.	.	.	.	S	S																S	S
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Q	Y	Q	K	L	R	Q	D	F	L	N	S	L	T	V	E	M	L	N	Q	D	L	R	Q	Q	L	S	N	D	M	A	L	I	L	L	Q	P
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		P	S	T	V	L	Q	Q	.	.	.	.	I	D	A	V	A	D	A	D	V	I	N	A	A	K	K	F	V	S	G	R	K	S	M	A	A	S	G	N
Template Known Secondary structure									.	.	.	.			T																S
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.					.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.