Job Description P15042 Confidence 99.16% Date Thu Jan 5 11:34:23 GMT 2012 Rank 20 Aligned Residues 239 % Identity 19% Template c2hivA_ PDB info PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from s. solfataricus Resolution 2.05 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		P	M	L	S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	.	R	A	I	P
Query Conservation																																																																													.
Alig confidence						.														.	.	.	.	.	.	.	.	.	.	.																								.								.	.	.	.												.
Template Conservation						.														.	.	.	.	.	.	.	.	.	.	.																								.								.	.	.	.
Template Sequence		P	M	L	A	.	E	R	L	S	N	P	E	E	I	L	K	K	M	.	.	.	.	.	.	.	.	.	.	.	G	G	N	A	I	V	D	Y	K	Y	D	G	E	R	A	Q	I	H	K	K	E	D	K	.	I	F	I	F	S	R	R	.	.	.	.	L	E	N	I	T	S	Q	Y	P	D	V	V	D	Y	V	S
Template Known Secondary structure						.				S									T	.	.	.	.	.	.	.	.	.	.	.	T	T									S	S									T	T		.						T	T	.	.	.	.			B		G	G	G
Template Predicted Secondary structure						.														.	.	.	.	.	.	.	.	.	.	.																								.								.	.	.	.
Template SS confidence
		235	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.												.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		L	K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	.	.	.	.	.	.	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L
Query Conservation																										.	.	.	.	.	.
Alig confidence						.	.	.	.																	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	I	E	.	.	.	.	G	K	E	F	I	I	E	G	E	I	V	A	I	D	P	E	S	G	E	M	R	P	F	Q	E	L	M	H	R	K	R	K	S	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	A	I	K	E	Y	P	V	N	V	F	L	F	D	L	M	Y	Y
Template Known Secondary structure				B		.	.	.	.		S	S										B		T	T	T			B			T										S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure						.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		298	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.																			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		231	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure				.																		.	.	.	.																																											.
Query SS confidence				.																		.	.	.	.																																											.
Query Sequence		E	G	.	G	E	L	P	D	T	H	L	G	R	L	L	Q	F	K	K	W	.	.	.	.	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	.	N	S	L	A	Q	Q	E	Q	L	G	F	V	A
Query Conservation				.																		.	.	.	.																																											.
Alig confidence				.																		.	.	.	.																															.	.	.	.	.	.							.								.	.	.
Template Conservation																																																								.	.	.	.	.	.															.	.	.
Template Sequence		E	D	V	D	Y	T	T	K	P	L	E	A	R	R	K	L	L	E	S	I	V	K	P	N	D	Y	V	K	I	A	H	H	I	Q	A	N	N	V	E	D	L	K	S	F	F	Y	R	A	I	S	E	G	G	E	.	.	.	.	.	.	G	V	M	V	K	A	I	G	K	D	A	I	Y	Q	.	.	.	A	G	A
Template Known Secondary structure		T	T				T	T	S													B				S	S										S	S														T	T			.	.	.	.	.	.								S	T	T					.	.	.	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.															.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.							410	.	.	.	.	.	.	.	.	.	420	.	.	.				.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																.								.	.																		.
Query SS confidence															.	.	.	.	.	.	.																.								.	.																		.
Query Sequence		R	A	P	R	W	A	V	A	F	K	F	P	A	.	.	.	.	.	.	.	Q	E	Q	M	T	F	V	R	D	V	E	F	Q	V	G	.	R	T	G	A	I	T	P	.	.	V	A	R	L	E	P	V	H	V	A	G	V	L	V	S	N	A	.	T	L	H	N	A	D	E	I	E	R	L
Query Conservation															.	.	.	.	.	.	.																.								.	.																		.
Alig confidence							.	.	.						.	.	.	.	.	.	.																.								.	.																		.
Template Conservation							.	.	.
Template Sequence		R	G	W	L	W	.	.	.	I	K	L	K	R	D	Y	Q	S	E	M	A	D	T	V	D	L	V	V	V	G	G	F	Y	G	K	G	K	R	G	G	K	I	S	S	L	L	M	A	A	Y	N	P	K	T	D	S	F	E	S	V	C	K	V	A	S	G	F	S	D	E	Q	L	D	E	L
Template Known Secondary structure							.	.	.					T	T		T	T	S	S															S	G	G	G	T	T	S											T	T	T	T										B	S
Template Predicted Secondary structure							.	.	.
Template SS confidence
		427	.	.	430	.				.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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