20 c2hivA_ Probab=99.16   E-value=1.5e-08  Score=79.13  Aligned_columns=239  Identities=19%

Q ss_pred             CCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHH-CCCC
Q ss_conf             403601139999999999999874168788319999731828999998599899999648887453255777754-1343
Q batch____        78 PMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTI-RAIP  156 (671)
Q Consensus        78 pMlSL~k~~~~~el~~w~~rv~k~l~~~~~~~~~~epKiDGlsi~L~Ye~G~Lv~a~TRGDG~~GeDVT~nv~~I-~~iP  156 (671)
                      |||. ..+.+.+++....           ...|++|.|+||.-+.+.+.+|. ++..||.    |+|+|+....+ ..+.
T Consensus       222 PMLa-~~~~~~~~~~~~~-----------~~~~~~E~K~DG~R~qih~~~~~-v~~~SR~----g~d~t~~~p~l~~~~~  284 (577)
T c2hivA_         222 PMLA-ERLSNPEEILKKM-----------GGNAIVDYKYDGERAQIHKKEDK-IFIFSRR----LENITSQYPDVVDYVS  284 (577)
T ss_dssp             CCEE-EECSCHHHHHHHT-----------TTCEEEEEECSSEEEEEEEETTE-EEEECTT----CCBCGGGCHHHHHHHH
T ss_pred             HHHC-CCCCCHHHHHHCC-----------CCEEEEEECCCCEEEEEEEECCE-EEEEECC----CCCCHHHHHHHHHHHH
T ss_conf             3315-5389977887225-----------87699999058439999997996-9999608----8201032178999998


Q ss_pred             CCCCCCCCCCEEEEEEEEEEEHHH------HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCC
Q ss_conf             116655688538998799964878------99999999974998546648998888740498788609741898760156
Q batch____       157 LKLHGENIPARLEVRGEVFLPQAG------FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVL  230 (671)
Q Consensus       157 ~~l~~~~~p~~leiRGEv~i~~~~------F~~lN~~~~~~g~~~faNpRN~aAGslr~ld~~~~~~r~L~f~~y~~~~~  230 (671)
                      ..++    +..+.+=||++.-...      |+.+.......+.                  .......++.|++|++.+.
T Consensus       285 ~~~~----~~~~ILDGElv~~d~~~~~~~~f~~l~~r~~~~~~------------------~~~~~~~~~~~~vFDiL~l  342 (577)
T c2hivA_         285 KYIE----GKEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDI------------------YEAIKEYPVNVFLFDLMYY  342 (577)
T ss_dssp             HHBC----CSSEEEEEEEEEBCTTTCCBCCTHHHHHHHHCSCH------------------HHHHHHSCEEEEEEEEEEE
T ss_pred             HCCC----CCEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCCC------------------CCHHCCCCEEEEEEEEEEE
T ss_conf             2478----86489986999972787865898899852202342------------------0000138758999720213


Q ss_pred             CC-CCCCHHHHHHHHHHHHC----CCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-CCHHHHHHCCCCC
Q ss_conf             76-65200089999999977----986575347618989999999999976402888645079996-3726776518567
Q batch____       231 EG-GELPDTHLGRLLQFKKW----GLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKV-NSLAQQEQLGFVA  304 (671)
Q Consensus       231 ~~-~~~~~t~~e~l~~L~~~----Gf~v~~~~~~~~~~~ei~~~~~~~~~~R~~l~y~iDGiViKv-n~~~~~~~lG~ts  304 (671)
                      ++ ........++.+.|+.+    +.-.......+.+.+++.++++...+.+.+      |+|+|- |.-..+.   ...
T Consensus       343 ~g~~l~~~pl~eR~~~L~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~E------Giv~K~l~~~s~Y~---~g~  413 (577)
T c2hivA_         343 EDVDYTTKPLEARRKLLESIVKPNDYVKIAHHIQANNVEDLKSFFYRAISEGGE------GVMVKAIGKDAIYQ---AGA  413 (577)
T ss_dssp             TTEECTTSCHHHHHHHHHHHBCCCSSEEECCEEEESSHHHHHHHHHHHHHTTCC------EEEEECCSTTCCCC---TTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC------EEEEEECCCCCCCC---CCC
T ss_conf             630314898899999999860678828995677559989999999999976997------79994078777411---588


Q ss_pred             CCCCCEEEEECCC-------CEEEEEEEEEEEEEC-CCEEEEE--EEEEEEEEECCEEEEEE-ECCCHHHHHHC
Q ss_conf             9997169875588-------628999978999833-6502668--99997288879799866-44998899976
Q batch____       305 RAPRWAVAFKFPA-------QEQMTFVRDVEFQVG-RTGAITP--VARLEPVHVAGVLVSNA-TLHNADEIERL  367 (671)
Q Consensus       305 k~PrWaiA~Kf~~-------e~~~T~l~~I~~qVG-RTG~iTP--vA~lePV~l~G~tVsra-TLhN~~~i~~~  367 (671)
                      ++..|   +|+.+       ++....|....|-.| |+|.++.  +|..+|-.=.-.+|.++ |..+.+..+.+
T Consensus       414 Rs~~W---lK~K~dy~~~~~~t~Dlvvig~~~g~gkr~~~~~~fllg~~~~~~~~~~~v~kvgsGfsd~~~~~l  484 (577)
T c2hivA_         414 RGWLW---IKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDSFESVCKVASGFSDEQLDEL  484 (577)
T ss_dssp             EEEEE---EEEETTCTTSSCEEEEEEEEEEEECSGGGTTSEEEEEEEEEETTTTEEEEEEEECBSCCHHHHHHH
T ss_pred             CCCCE---EEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHH
T ss_conf             47744---876401223433210057875420788667711369999994799879999883389999999999