Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76340
DateThu Jan 5 12:21:57 GMT 2012
Unique Job ID15c16188977375c5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2oqrA_
Top template information
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 98%
218 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW
Secondary structure 




















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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA
Secondary structure 




















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Disorder 






















































??

?
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   .........130.........140.........150.........160.........170.........180
Sequence  LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN
Secondary structure 




















SS confidence 



























































Disorder  ?
??










































?











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   .........190.........200.........210.........220...
Sequence  FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK
Secondary structure 






















SS confidence 










































Disorder 






















?













?????
Disorder confidence 










































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2oqr chain A

3D model

Region: 2 - 219
Aligned: 218
Modelled: 218
Confidence: 100.0%
Identity: 36%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 1ys7 chain B

3D model

Region: 2 - 218
Aligned: 216
Modelled: 217
Confidence: 100.0%
Identity: 35%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2hqr chain A

3D model

Region: 1 - 222
Aligned: 217
Modelled: 221
Confidence: 100.0%
Identity: 24%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 2gwr chain A

3D model

Region: 1 - 221
Aligned: 219
Modelled: 221
Confidence: 100.0%
Identity: 34%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 3r0j chain A

3D model

Region: 1 - 221
Aligned: 218
Modelled: 221
Confidence: 100.0%
Identity: 32%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 1kgs chain A

3D model

Region: 1 - 220
Aligned: 215
Modelled: 220
Confidence: 100.0%
Identity: 36%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 1p2f chain A

3D model

Region: 2 - 219
Aligned: 211
Modelled: 215
Confidence: 100.0%
Identity: 31%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 3q9s chain A

3D model

Region: 2 - 211
Aligned: 208
Modelled: 210
Confidence: 100.0%
Identity: 40%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans

Phyre2

PDB 1zn2 chain A

3D model

Region: 2 - 214
Aligned: 194
Modelled: 213
Confidence: 99.9%
Identity: 22%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 3c3w chain B

3D model

Region: 1 - 208
Aligned: 197
Modelled: 204
Confidence: 99.9%
Identity: 20%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 2hqn chain A

3D model

Region: 119 - 223
Aligned: 105
Modelled: 105
Confidence: 99.9%
Identity: 24%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 2jzy chain A

3D model

Region: 120 - 223
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 46%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein pcor;
PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae

Phyre2

PDB 1rnl chain A

3D model

Region: 1 - 215
Aligned: 193
Modelled: 198
Confidence: 99.8%
Identity: 28%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 2ayx chain A

3D model

Region: 1 - 124
Aligned: 124
Modelled: 124
Confidence: 99.8%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain

Phyre2

PDB 1gxq chain A

3D model

Region: 118 - 220
Aligned: 103
Modelled: 103
Confidence: 99.8%
Identity: 30%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: C-terminal effector domain of the bipartite response regulators
Family: PhoB-like

Phyre2

PDB 2hwv chain A

3D model

Region: 123 - 222
Aligned: 100
Modelled: 100
Confidence: 99.8%
Identity: 34%
PDB header:transcription
Chain: A: PDB Molecule:dna-binding response regulator vicr;
PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.

Phyre2

PDB 3bre chain A

3D model

Region: 1 - 116
Aligned: 116
Modelled: 116
Confidence: 99.8%
Identity: 33%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702

Phyre2

PDB 3q9v chain B

3D model

Region: 122 - 218
Aligned: 97
Modelled: 97
Confidence: 99.8%
Identity: 33%
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra c-terminal domain(123-221) from deinococcus2 radiodurans

Phyre2

PDB 1opc chain A

3D model

Region: 125 - 220
Aligned: 96
Modelled: 96
Confidence: 99.8%
Identity: 26%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: C-terminal effector domain of the bipartite response regulators
Family: PhoB-like

Phyre2

PDB 1w25 chain B

3D model

Region: 2 - 112
Aligned: 111
Modelled: 111
Confidence: 99.8%
Identity: 37%
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp

Phyre2
1

c2oqrA_
2

c1ys7B_
3

c2hqrA_
4

c2gwrA_
5

c3r0jA_
6

c1kgsA_
7

c1p2fA_
8

c3q9sA_
9

c1zn2A_
10

c3c3wB_
11

c2hqnA_
12

c2jzyA_
13

c1rnlA_
14

c2ayxA_
15

d1gxqa_
16

c2hwvA_
17

c3breA_
18

c3q9vB_
19

d1opca_
20

c1w25B_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2oqrA_



100.0 36 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
2c1ys7B_



100.0 35 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
3c2hqrA_



100.0 24 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
4c2gwrA_



100.0 34 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
5c3r0jA_



100.0 32 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
6c1kgsA_



100.0 36 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
7c1p2fA_



100.0 31 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
8c3q9sA_



100.0 40 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
9c1zn2A_



99.9 22 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
10c3c3wB_



99.9 20 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
11c2hqnA_



99.9 24 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
12c2jzyA_



99.9 46 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein pcor;
PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae
13c1rnlA_



99.8 28 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
14c2ayxA_



99.8 25 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
15d1gxqa_



99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
16c2hwvA_



99.8 34 PDB header:transcription
Chain: A: PDB Molecule:dna-binding response regulator vicr;
PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.
17c3breA_



99.8 33 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
18c3q9vB_



99.8 33 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra c-terminal domain(123-221) from deinococcus2 radiodurans
19d1opca_



99.8 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
20c1w25B_



99.8 37 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
21d2a9pa1



not modelled 99.8 39 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
22c2zxjB_



not modelled 99.8 32 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein walr;
PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus
23c1ny5A_



not modelled 99.8 25 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
24c2zwmA_



not modelled 99.8 41 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
25c2pmuD_



not modelled 99.8 27 PDB header:transcription regulation
Chain: D: PDB Molecule:response regulator phop;
PDBTitle: crystal structure of the dna-binding domain of phop
26c3eq2A_



not modelled 99.8 31 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
27c3rqiA_



not modelled 99.8 20 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
28d1ny5a1



not modelled 99.8 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
29d1s8na_



not modelled 99.8 31 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
30c2qzjC_



not modelled 99.8 30 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
31d1zgza1



not modelled 99.8 31 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
32d1zh2a1



not modelled 99.8 38 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
33c2k4jA_



not modelled 99.8 31 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: arsr dna binding domain
34c3i5aA_



not modelled 99.8 29 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
35d1kgsa2



not modelled 99.8 43 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
36d2pl1a1



not modelled 99.8 32 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
37c3nhzA_



not modelled 99.8 39 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
38d1w25a1



not modelled 99.8 37 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
39d1p2fa1



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
40d1xhfa1



not modelled 99.8 34 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
41d1ys7a2



not modelled 99.8 41 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
42d2ayxa1



not modelled 99.8 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
43d1ys7a1



not modelled 99.8 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
44c3gt7A_



not modelled 99.8 32 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
45c3dzdA_



not modelled 99.8 23 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
46c3cfyA_



not modelled 99.8 31 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
47c3klnC_



not modelled 99.8 12 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
48d1jbea_



not modelled 99.8 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
49c3hdgE_



not modelled 99.8 23 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
50d1zesa1



not modelled 99.8 40 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
51d1peya_



not modelled 99.8 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
52d1mvoa_



not modelled 99.8 40 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
53d1dbwa_



not modelled 99.8 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
54c2qr3A_



not modelled 99.8 24 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
55d1p6qa_



not modelled 99.8 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
56c2jrlA_



not modelled 99.8 25 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
57c2zayA_



not modelled 99.8 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
58d1krwa_



not modelled 99.8 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
59c2rjnA_



not modelled 99.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
60c3h1gA_



not modelled 99.8 26 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
61c3f6cB_



not modelled 99.8 19 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
62c3lteH_



not modelled 99.8 24 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
63d1dz3a_



not modelled 99.8 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
64c3c3mA_



not modelled 99.8 24 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
65c3t8yA_



not modelled 99.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
66c3t6kB_



not modelled 99.8 33 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
67d1kgsa1



not modelled 99.8 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
68c3hv2B_



not modelled 99.8 27 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
69d1qkka_



not modelled 99.8 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
70c3cu5B_



not modelled 99.8 19 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
71c1a2oB_



not modelled 99.8 23 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
72d2r25b1



not modelled 99.7 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
73c3cnbC_



not modelled 99.7 27 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
74d1yioa2



not modelled 99.7 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
75d1heya_



not modelled 99.7 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
76c2hqoA_



not modelled 99.7 26 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
77c3eulB_



not modelled 99.7 26 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
78c3crnA_



not modelled 99.7 23 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
79d1mb3a_



not modelled 99.7 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
80c2qv0A_



not modelled 99.7 22 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
81c3cg0A_



not modelled 99.7 21 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
82d1u0sy_



not modelled 99.7 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
83c3jteA_



not modelled 99.7 24 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
84c3cg4A_



not modelled 99.7 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
85c3hebB_



not modelled 99.7 26 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
86d1k66a_



not modelled 99.7 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
87d1a2oa1



not modelled 99.7 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
88c3khtA_



not modelled 99.7 27 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
89c3b2nA_



not modelled 99.7 22 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
90d1a04a2



not modelled 99.7 31 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
91c3a0rB_



not modelled 99.7 32 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
92c2qxyB_



not modelled 99.7 20 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
93c3cz5B_



not modelled 99.7 20 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
94c2qvgA_



not modelled 99.7 24 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
95c3gl9B_



not modelled 99.7 34 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
96c3hzhA_



not modelled 99.7 26 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
97c2j48A_



not modelled 99.7 22 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
98c3grcD_



not modelled 99.7 20 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
99c3hdvB_



not modelled 99.7 21 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
100c3c97A_



not modelled 99.7 22 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:signal transduction histidine kinase;
PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
101c2jk1A_



not modelled 99.7 22 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
102c3h5iA_



not modelled 99.7 28 PDB header:transcription
Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef
PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans
103d1dcfa_



not modelled 99.7 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
104d1i3ca_



not modelled 99.7 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
105c3m6mF_



not modelled 99.7 25 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
106c3kcnA_



not modelled 99.7 23 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
107c3i42A_



not modelled 99.7 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
108c3mmnA_



not modelled 99.7 23 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
109c3n0rA_



not modelled 99.7 22 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
110d1p2fa2



not modelled 99.7 30 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
111d2b4aa1



not modelled 99.7 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
112c2nt3A_



not modelled 99.7 22 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator homolog;
PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant)
113c3nhmA_



not modelled 99.6 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from myxococcus xanthus
114c3snkA_



not modelled 99.6 18 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
115c2rdmB_



not modelled 99.6 23 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
116c3luaA_



not modelled 99.6 29 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
117c3eodA_



not modelled 99.6 32 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
118d1w25a2



not modelled 99.6 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
119c3ilhA_



not modelled 99.6 20 PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
120d1qo0d_



not modelled 99.6 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Positive regulator of the amidase operon AmiR

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0