Job Description P77713 Confidence 91.04% Date Wed Jan 25 15:21:12 GMT 2012 Rank 50 Aligned Residues 205 % Identity 17% Template c1upsB_ PDB info PDB header:glycosyl hydrolase Chain: B: PDB Molecule:glcnac-alpha-1,4-gal-releasing endo-beta- PDBTitle: glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase2 from clostridium perfringens Resolution 1.82 Å

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		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.							.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																												.					.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.					.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	P	Q	V	A	E	Q	P	A	A	V	P	G	N	W	R	D	D	F	D	A	S	S	L	D	.	P	E	L	Q	.	.	.	.	.	.	T	L	R	I	P	F	D	D	T	L	G	S	L	T	A	R	P	G	F	L	R	L	Y	G	N	D	S	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.					.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.					.	.	.	.	.	.						.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.
Template Sequence		D	F	P	A	N	P	I	E	K	A	G	Y	K	L	D	F	S	D	E	F	N	G	P	T	L	D	R	E	K	W	T	D	Y	Y	L	P	H	W	C	K	D	P	.	E	S	A	K	A	N	Y	R	F	E	N	G	S	L	V	E	Y	I	T	E	D	Q	K	P	W	C	P	E	H	D	G	T	V	R	S	S	A
Template Known Secondary structure								S	S		T	T												S	S			T	T	T		B		B	S	S	G	G	G		S	S	G	.	G	G	G	B							T	T								T	T				S						T	T
Template Predicted Secondary structure																																												.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
																375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420										.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	T	Q	S	T	V	A	R	R	W	Q	H	F	A	F	.	R	A	E	T	R	M	E	F	S	P	V	H	F	Q	Q	S	A	G	L	T	C	Y	Y	N	S	K	N	W	S	.	.	.	.	.	.	.	.	.	Y	C	F	V	D	Y	E	E	G	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	M	S	F	D	K	S	W	I	H	N	F	S	G	T	T	D	N	H	E	R	N	E	W	R	G	Y	T	T	K	Y	G	Y	F	E	I	R	A	K	L	S	N	T	G	G	G	G	H	Q	A	W	W	M	V	G	M	Q	D	D	T	N	D	W	F	N	S	K	Q	T	G	E	I	D	I	L	E	T	F	F	S
Template Known Secondary structure				S				T	T				T	T			S										S	S		B	S	S														S	S												T	T	T	S	S	S	T	T		S											B	T	T
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		431	.	.	.	.	.	.	.	.						440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure											.	.	.	.	.																									.
Query SS confidence											.	.	.	.	.																									.
Query Sequence		G	R	T	I	K	V	I	Q	L	.	.	.	.	.	D	H	N	V	P	S	W	P	L	H	E	Q	P	I	P	V	P	E	H	A	E	S	V	W	.	L	R	V	D	V	D	T	L	V	Y	R	Y	S	Y	S	F	D	G	E	T	W	H	T	V	P	V	T	Y	E	A	W	K	L	S	D	D	Y	I	G	G	R
Query Conservation											.	.	.	.	.																									.
Alig confidence											.	.	.	.	.																									.														.	.																			.	.	.	.	.	.	.	.
Template Conservation																																																						.	.																			.	.	.	.	.	.	.	.
Template Sequence		K	K	D	T	W	R	I	A	A	Y	G	W	N	D	P	N	F	Q	T	S	W	T	I	S	E	D	K	V	P	S	G	D	P	T	S	E	Y	H	I	Y	A	M	E	W	T	P	T	A	L	K	F	Y	.	.	Y	D	N	E	L	F	K	V	I	Y	G	S	P	D	Y	E	M	G	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T									T	T		T	T	S		S	S									S	S	S		T	T	T	S										S	S						.	.		T	T												S				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.						.	.	.	.	530	.	.		.	.	.	.
Predicted Secondary structure																							.	.	.	.	.								.
Query SS confidence																							.	.	.	.	.								.
Query Sequence		G	F	F	T	G	A	F	V	G	L	H	C	E	D	I	S	G	D	G	C	Y	.	.	.	.	.	A	D	F	D	Y	F	T	.	Y	E	P	V
Query Conservation																							.	.	.	.	.								.
Alig confidence		.	.	.	.	.																	.	.	.	.	.								.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	T	I	L	N	I	Y	T	D	A	G	S	G	A	H	N	D	V	W	P	K	E	W	A	I	D	Y	M	R	V	W	K	P	V
Template Known Secondary structure		.	.	.	.	.								S	B	T	T	B				S																	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions