Job Description P33030 Confidence 100.00% Date Thu Jan 5 11:51:08 GMT 2012 Rank 1 Aligned Residues 297 % Identity 25% Template c1nijA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yjia; PDBTitle: yjia protein Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	T	N	L	I	T	G	F	L	G	S	G	K	T	T	S	I	L	H	L	L	A	H	K	D	P	N	E	K	W	A	V	L	V	N	E	F	G	E	V	G	I	D	G	A	L	L	A	D	S	G	A	L	L	K	E	I	P	G	G	C	M	C	C	V	N	G	L	P	M	Q	V	G	L	N	T	L	L	R
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		I	A	V	T	L	L	T	G	F	L	G	A	G	K	T	T	L	L	R	H	I	L	N	E	.	Q	H	G	Y	K	I	A	V	I	E	N	E	F	G	E	V	S	V	D	D	Q	L	I	G	D	R	A	T	Q	I	K	T	L	T	N	G	C	I	C	C	S	R	S	N	E	L	E	D	A	L	L	D	L	L	D
Template Known Secondary structure										S	S	S	S	S											S	.											S	S			S										T	T	S							T	T	S						T	T	S
Template Predicted Secondary structure																										.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82						.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.																										.
Query SS confidence			.	.	.	.	.																										.
Query Sequence		Q	.	.	.	.	.	G	K	P	D	R	L	L	I	E	P	T	G	L	G	H	P	K	Q	I	L	D	L	L	T	A	.	P	V	Y	E	P	W	I	D	L	R	A	T	L	C	I	L	D	P	R	L	L	L	D	E	K	S	A	S	N	E	N	F	R	D	Q	L	A	A	A	D	I	I	V	A	N	K	S	D
Query Conservation			.	.	.	.	.																										.
Alig confidence			.	.	.	.	.																										.																													.
Template Conservation																																																														.
Template Sequence		N	L	D	K	G	N	I	Q	F	D	R	L	V	I	E	C	T	G	M	A	D	P	G	P	I	I	Q	T	F	F	S	H	E	V	L	C	Q	R	Y	L	L	D	G	V	I	A	L	V	D	A	V	H	A	D	E	Q	M	N	Q	F	.	T	I	A	Q	S	Q	V	G	Y	A	D	R	I	L	L	T	K	T	D
Template Known Secondary structure						T	S				S								T	T													S																		T	T	T									.									T		S							T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	T	P	E	S	E	Q	A	L	Q	R	W	W	Q	Q	N	G	G	D	R	Q	L	I	H	S	E	H	G	K	V	D	G	H	L	L	D	L	P	R	R	N	L	A	E	L	P	A	S	A	A	H	S	H	Q	H	V	V	K	K	G	L	A	A	L	S	L	P	E	H	Q	R	W	R	R	S	L	N	S	G
Query Conservation
Alig confidence								.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	G	E	A	E	.	.	K	L	H	E	R	L	A	R	I	N	A	R	A	P	V	Y	T	V	T	H	G	D	I	D	L	G	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	T	N	G	F	M	L	E	E	N	V	V	S	T	K	P	R	F	H	F	I	A	D
Template Known Secondary structure		T		S		T		.	.											S	S	S							S	S				G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				T	T	S			S				S	S				S		S	T	G	G
Template Predicted Secondary structure								.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																					.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.																	.	.														.	.	.
Query SS confidence																												.	.	.	.	.	.																	.	.														.	.	.
Query Sequence		Q	G	Y	Q	A	C	G	W	I	F	D	A	D	T	V	F	D	T	I	G	I	L	E	W	A	R	.	.	.	.	.	.	L	A	P	V	E	R	V	K	G	V	L	R	I	P	E	G	.	.	L	V	R	I	N	R	Q	G	D	D	L	H	I	.	.	.	E	T	Q	N	V	A	P	P	D	S	R	I	E	L
Query Conservation																												.	.	.	.	.	.																	.	.														.	.	.
Alig confidence																												.	.	.	.	.	.																	.	.														.	.	.
Template Conservation
Template Sequence		K	Q	N	D	I	S	S	I	V	V	E	L	D	Y	P	V	D	I	S	E	V	S	R	V	M	E	N	L	L	L	E	S	A	D	K	L	L	R	Y	K	G	M	L	W	I	D	G	E	P	N	R	L	L	F	Q	G	V	Q	R	L	Y	S	A	D	W	D	R	P	W	G	D	E	K	P	H	S	T	M	V	F
Template Known Secondary structure		G	G		S									S	S		B																T	T	T	T										B	T	T		S									T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	S	E	A	D	W	N	A	L	Q	S	A	L	L	K	L	R
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		I	G	I	Q	.	L	P	E	E	E	I	R	A	A	F	A	G	L	R
Template Known Secondary structure					S	.												T	T
Template Predicted Secondary structure						.
Template SS confidence
		300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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