Job Description P77258 Confidence 99.67% Date Thu Jan 5 12:26:56 GMT 2012 Rank 28 Aligned Residues 243 % Identity 16% Template d1juba_ SCOP info TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Resolution 1.40

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.												.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	V	G	A	I	T	A	A	N	R	I	F	M	A	P	L	T	R	L	R	S	I	E	P	G	D	I	P	T	P	L	M	A	E	Y	Y	R	Q	R	A	S	A	G	L	I	I	S	E	A	T	Q	I	S	A	Q	A	K	G	Y	A	G	.	.	.	.	.	.	.	.	.	.	.	A	P	G	I	H	S	P
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		T	T	F	A	N	A	K	F	A	N	P	F	M	N	A	S	G	V	H	C	.	.	.	.	.	.	.	.	.	M	T	I	E	D	L	E	E	L	K	A	S	Q	A	G	A	Y	I	T	K	S	S	T	L	E	K	R	E	G	N	P	L	P	R	Y	V	D	L	E	L	G	S	I	N	S	M	G	L	P	N	L
Template Known Secondary structure					T	T				S	S	S					T	T	S	S		.	.	.	.	.	.	.	.	.	S	S										S	S		S			B				B		S	S		B			S		S							T	T										B	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.										.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	I	A	A	W	K	K	I	T	A	G	V	H	A	E	N	G	H	M	A	V	Q	L	W	H	T	G	R	I	S	H	A	S	L	Q	P	G	G	Q	A	P	V	A	P	S	A	L	S	A	G	T	R	T	S	L	R	D	E	N	G	Q	A	I	R	V	E	T	S	M	P	R	A	L	E	L	E	E	I	P
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	D	Y	Y	L	D	Y	V	L	K	N	Q	K	E	N	A	Q	E	G	P	I	F	F	S	I	A	G	M	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T		S	S	S									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	I	V	N	D	F	R	Q	A	I	A	N	A	R	E	A	G	.	F	D	L	V	E	L	H	S	A	H	G	Y	L	L	H	Q	F	L	S	P	S	S	N	H	R	T	D	Q	Y	G	G	S	V	E	N	R	A	R	L	V	L	E	V	V	D	A	G	I	E	E	W	G	A	D	R	I	G	I	R	V	S	P
Query Conservation																			.
Alig confidence		.	.																.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.										.
Template Conservation		.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.										.
Template Sequence		.	.	A	A	E	N	I	A	M	L	K	K	I	Q	E	S	D	F	S	G	I	T	E	L	N	L	S	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	V	P	G	E	P	Q	L	A	Y	D	F	E	A	T	E	K	L	L	K	E	V	F	T	F	F	.	T	K	P	L	G	V	K	L	P	.
Template Known Secondary structure		.	.														S				S						S			.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S				G	G	G													T	T	T		.		S								.
Template Predicted Secondary structure		.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.										.
Template SS confidence
				105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130															.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280																										.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	T	F	Q	N	T	D	N	G	P	N	E	E	A	D	A	L	Y	L	I	E	Q	L	G	K	R	G	I	A	Y	L	H	M	S	E	P	D	W	A	G	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	T	D	A	F	R	E	K	V	R	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	P	Y	F	D	L	V	H	F	D	I	M	A	E	I	L	N	Q	F	P	L	T	Y	V	N	S	V	N	S	I	G	N	G	L	F	I	D	P	E	A	E	S	V	V	I	K	P	K	D	G	F	G	G	I	G	G	A	Y	I	K	P	T	A	L	A	N	V	R	A	F	Y	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.				S												T	T	S																			T	T	T	T			S		S	G	G	G	G						S	G	G	G													T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		293	.			.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.											.																											.
Query SS confidence				.	.											.																											.
Query Sequence		R	F	.	.	H	G	P	I	I	G	A	G	A	Y	.	T	V	E	K	A	E	T	L	I	G	K	G	L	I	D	A	V	A	F	G	R	D	W	I	A	N	.	P	D	L	V	A	R	L	Q	R
Query Conservation				.	.											.																											.
Alig confidence				.	.											.													.														.
Template Conservation																													.
Template Sequence		R	L	K	P	E	I	Q	I	I	G	T	G	G	I	E	T	G	Q	D	A	F	E	H	L	L	C	G	.	A	T	M	L	Q	I	G	T	A	L	H	K	E	G	P	A	I	F	D	R	I	I	K
Template Known Secondary structure		T	S		T	T	S						S	S			S											T	.		S													T
Template Predicted Secondary structure																													.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions