Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP06721
DateWed Jan 25 15:20:11 GMT 2012
Unique Job ID08c8055e49f17672

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2gqnB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
Confidence and coverage
Confidence:100.0% Coverage: 99%
392 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRG
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Disorder  ??????










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   .........70.........80.........90.........100.........110.........120
Sequence  TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSK
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   .........130.........140.........150.........160.........170.........180
Sequence  ILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDA
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   .........190.........200.........210.........220.........230.........240
Sequence  IIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLM
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   .........250.........260.........270.........280.........290.........300
Sequence  GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFW
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   .........310.........320.........330.........340.........350.........360
Sequence  KRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP
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?
?????



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   .........370.........380.........390.....
Sequence  QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV
Secondary structure 









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??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2gqn chain B

3D model

Region: 4 - 395
Aligned: 392
Modelled: 392
Confidence: 100.0%
Identity: 100%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide

Phyre2

PDB 1cl1 chain A

3D model

Region: 5 - 395
Aligned: 390
Modelled: 391
Confidence: 100.0%
Identity: 99%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1qgn chain A

3D model

Region: 1 - 394
Aligned: 389
Modelled: 393
Confidence: 100.0%
Identity: 27%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3ndn chain C

3D model

Region: 5 - 392
Aligned: 384
Modelled: 388
Confidence: 100.0%
Identity: 23%
PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate

Phyre2

PDB 2ctz chain A domain 1

3D model

Region: 5 - 392
Aligned: 383
Modelled: 388
Confidence: 100.0%
Identity: 26%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1y4i chain A domain 1

3D model

Region: 2 - 393
Aligned: 386
Modelled: 392
Confidence: 100.0%
Identity: 28%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1e5e chain A

3D model

Region: 2 - 395
Aligned: 389
Modelled: 394
Confidence: 100.0%
Identity: 30%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1i41 chain J

3D model

Region: 7 - 394
Aligned: 383
Modelled: 388
Confidence: 100.0%
Identity: 27%
PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa

Phyre2

PDB 2nmp chain C

3D model

Region: 4 - 393
Aligned: 374
Modelled: 390
Confidence: 100.0%
Identity: 31%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase

Phyre2

PDB 2cb1 chain A

3D model

Region: 5 - 393
Aligned: 379
Modelled: 389
Confidence: 100.0%
Identity: 24%
PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.

Phyre2

PDB 1n8p chain A

3D model

Region: 1 - 394
Aligned: 383
Modelled: 394
Confidence: 100.0%
Identity: 27%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3aem chain D

3D model

Region: 5 - 392
Aligned: 380
Modelled: 388
Confidence: 100.0%
Identity: 29%
PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate

Phyre2

PDB 1cs1 chain A

3D model

Region: 4 - 394
Aligned: 378
Modelled: 391
Confidence: 100.0%
Identity: 29%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 1ibj chain C

3D model

Region: 5 - 394
Aligned: 374
Modelled: 390
Confidence: 100.0%
Identity: 26%
PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana

Phyre2

PDB 1ibj chain A

3D model

Region: 5 - 394
Aligned: 374
Modelled: 387
Confidence: 100.0%
Identity: 26%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3qi6 chain B

3D model

Region: 4 - 391
Aligned: 370
Modelled: 380
Confidence: 100.0%
Identity: 26%
PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99

Phyre2

PDB 3e6g chain A

3D model

Region: 5 - 390
Aligned: 361
Modelled: 366
Confidence: 100.0%
Identity: 31%
PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae

Phyre2

PDB 1gc0 chain A

3D model

Region: 1 - 394
Aligned: 349
Modelled: 356
Confidence: 100.0%
Identity: 27%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2

PDB 3ri6 chain A

3D model

Region: 59 - 391
Aligned: 321
Modelled: 333
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes

Phyre2

PDB 1pff chain A

3D model

Region: 66 - 395
Aligned: 326
Modelled: 329
Confidence: 100.0%
Identity: 31%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Cystathionine synthase-like

Phyre2
1

c2gqnB_
2

d1cl1a_
3

d1qgna_
4

c3ndnC_
5

d2ctza1
6

d1y4ia1
7

d1e5ea_
8

c1i41J_
9

c2nmpC_
10

c2cb1A_
11

d1n8pa_
12

c3aemD_
13

d1cs1a_
14

c1ibjC_
15

d1ibja_
16

c3qi6B_
17

c3e6gA_
18

d1gc0a_
19

c3ri6A_
20

d1pffa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2gqnB_



100.0 100 PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
2d1cl1a_



100.0 99 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
3d1qgna_



100.0 27 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
4c3ndnC_



100.0 23 PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
5d2ctza1



100.0 26 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
6d1y4ia1



100.0 28 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
7d1e5ea_



100.0 30 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
8c1i41J_



100.0 27 PDB header:lyase
Chain: J: PDB Molecule:cystathionine gamma-synthase;
PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa
9c2nmpC_



100.0 31 PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
10c2cb1A_



100.0 24 PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
11d1n8pa_



100.0 27 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
12c3aemD_



100.0 29 PDB header:lyase
Chain: D: PDB Molecule:methionine gamma-lyase;
PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
13d1cs1a_



100.0 29 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
14c1ibjC_



100.0 26 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase;
PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana
15d1ibja_



100.0 26 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
16c3qi6B_



100.0 26 PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99
17c3e6gA_



100.0 31 PDB header:lyase
Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein;
PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae
18d1gc0a_



100.0 27 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
19c3ri6A_



100.0 26 PDB header:transferase
Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase;
PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes
20d1pffa_



100.0 31 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
21c3ht4B_



not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:aluminum resistance protein;
PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213
22c3hvyC_



not modelled 100.0 14 PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution
23c3fd0B_



not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution
24c2po3B_



not modelled 100.0 11 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
25c2c7tA_



not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose
PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
26c3bcxA_



not modelled 100.0 10 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
27c3gwpA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance;
PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution
28d1mdoa_



not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
29d1b9ha_



not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30c3ju7B_



not modelled 100.0 7 PDB header:transferase
Chain: B: PDB Molecule:putative plp-dependent aminotransferase;
PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
31c3dr4B_



not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:putative perosamine synthetase;
PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
32d1o69a_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
33c2r0tA_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase;
PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
34c3caiA_



not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
35c3uwcA_



not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:nucleotide-sugar aminotransferase;
PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
36c2ogeC_



not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:transaminase;
PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
37c3frkB_



not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:qdtb;
PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
38d1jf9a_



not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
39c3nysA_



not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
40c3hqtB_



not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
41c2w8wA_



not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
42d2bwna1



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
43d1qz9a_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
44d2fnua1



not modelled 100.0 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
45c3a2bA_



not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
46d1m6sa_



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
47c3e9kA_



not modelled 100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
48c3lwsF_



not modelled 100.0 13 PDB header:lyase
Chain: F: PDB Molecule:aromatic amino acid beta-eliminating
PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
49d1bs0a_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
50c3nnkC_



not modelled 100.0 14 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
51d1w7la_



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
52c3pj0D_



not modelled 100.0 13 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
53d1vjoa_



not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
54c3tqxA_



not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
55d1t3ia_



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
56c2hzpA_



not modelled 100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:kynureninase;
PDBTitle: crystal structure of homo sapiens kynureninase
57d1c4ka2



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Ornithine decarboxylase major domain
58c3jtxB_



not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
59c3b46B_



not modelled 100.0 9 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
60d1kl1a_



not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
61d2r5ea1



not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
62d2ch1a1



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
63c3f0hA_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
64c3islA_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
65d2v1pa1



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
66c3mafB_



not modelled 100.0 14 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
67d1h0ca_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
68c3lvmB_



not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
69c2hdyA_



not modelled 100.0 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
70c3ecdC_



not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
71d2hoxa1



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
72d1p3wa_



not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
73c3h14A_



not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
74d1fc4a_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
75d1wyua1



not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Glycine dehydrogenase subunits (GDC-P)
76c3l8aB_



not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
77c3e2yB_



not modelled 100.0 13 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
78d1svva_



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
79d1tpla_



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
80c3hbxB_



not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:glutamate decarboxylase 1;
PDBTitle: crystal structure of gad1 from arabidopsis thaliana
81c2huuA_



not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
82d1dfoa_



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
83c3dzzB_



not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
84c2z9wA_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
85c3hdoB_



not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
86d1c7ga_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
87c3ffrA_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
88d1v72a1



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
89c3eucB_



not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
90c3pplB_



not modelled 100.0 12 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
91c2dkjB_



not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
92c3ly1C_



not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
93d2c0ra1



not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
94d1j32a_



not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
95d2gb3a1



not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
96c2dr1A_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
97d1x0ma1



not modelled 100.0 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
98d1elua_



not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
99c3kaxB_



not modelled 100.0 12 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
100c3ihjA_



not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp
101c3op7A_



not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
102c3n0lA_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
103d1fg7a_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
104d1bw0a_



not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
105d1js3a_



not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Pyridoxal-dependent decarboxylase
106c2zc0C_



not modelled 99.9 15 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
107c3getA_



not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
108c3nraA_



not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
109c3f9tB_



not modelled 99.9 10 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
110d3bc8a1



not modelled 99.9 9 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
111d1wsta1



not modelled 99.9 11 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
112d1iuga_



not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
113c3dc1A_



not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
114c2jisA_



not modelled 99.9 11 PDB header:lyase
Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase;
PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
115c2x3lA_



not modelled 99.9 13 PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
116d1b5pa_



not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
117c3mc6C_



not modelled 99.9 11 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
118c3ffhA_



not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
119c2o1bA_



not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
120d1o4sa_



not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0