Email l.a.kelley@imperial.ac.uk Description P0ACD4 Date Thu Jan 5 11:17:57 GMT 2012 Unique Job ID 080ad46ef068e9dd

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1r9pa_ 100.0 86 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 2 c2z7eB_ 100.0 53 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 3 d1wfza_ 100.0 74 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 4 d1xjsa_ 100.0 31 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 5 d1su0b_ 100.0 38 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 6 c2qq4A_ 100.0 32 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 7 d1mzga_ 96.2 13 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 8 d1ni7a_ 94.9 21 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 9 c1wloA_ 91.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 10 c2e5aA_ 75.5 11 PDB header:ligase Chain: A: PDB Molecule:lipoyltransferase 1; PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp 11 d1u0la1 67.4 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 12 c2zkrr_ 56.0 15 PDB header:ribosomal protein/rna Chain: R: PDB Molecule:rna expansion segment es39 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 13 d1t9ha1 54.1 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 d1v97a4 52.3 8 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 15 d1ffvc1 50.5 13 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 16 d1fs1b1 49.6 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 17 d1fs2b1 42.2 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 18 c3jywN_ 38.3 18 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l17(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 19 d1nexa1 37.8 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 20 c2kelB_ 35.7 44 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 21 d1i4ja_ not modelled 34.8 23 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 22 d1n62c1 not modelled 33.6 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 23 c3cxoA_ not modelled 33.3 13 PDB header:lyase Chain: A: PDB Molecule:putative galactonate dehydratase; PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate 24 c4a17Q_ not modelled 33.2 16 PDB header:ribosome Chain: Q: PDB Molecule:rpl17; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 25 c3iz5V_ not modelled 33.0 18 PDB header:ribosome Chain: V: PDB Molecule:60s ribosomal protein l17 (l22p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 26 c2ftcM_ not modelled 31.8 16 PDB header:ribosome Chain: M: PDB Molecule:mitochondrial ribosomal protein l22 isoform a; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 27 d2ovra1 not modelled 31.7 24 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 28 c1x2gB_ not modelled 28.7 18 PDB header:ligase Chain: B: PDB Molecule:lipoate-protein ligase a; PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli 29 d1vqza1 not modelled 28.0 17 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 30 d1t3qc1 not modelled 27.9 17 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 31 d1x2ga1 not modelled 27.6 26 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 32 d2zjrp1 not modelled 25.9 23 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 33 d2p92a1 not modelled 24.0 25 Fold:eIF1-like Superfamily:TM1457-like Family:TM1457-like 34 c3bboU_ not modelled 23.6 23 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l22; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 35 d1jroa3 not modelled 21.5 13 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 36 c2p1nD_ not modelled 18.2 20 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 37 d2axoa1 not modelled 18.1 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like 38 c3hrdC_ not modelled 18.1 16 PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 39 d1vqor1 not modelled 15.8 24 Fold:Ribosomal protein L22 Superfamily:Ribosomal protein L22 Family:Ribosomal protein L22 40 d1io2a_ not modelled 14.9 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 41 c1nexC_ not modelled 14.7 24 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 42 c2yv5A_ not modelled 14.3 17 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 43 c1t9hA_ not modelled 14.0 24 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 44 c2axoA_ not modelled 13.8 19 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein atu2684; PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35. 45 c3h5fB_ not modelled 13.0 27 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 46 c3h5fA_ not modelled 13.0 27 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 47 c3h5gA_ not modelled 13.0 27 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 48 c3h5gC_ not modelled 13.0 27 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 49 c3h5fC_ not modelled 13.0 27 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 50 c3h5gB_ not modelled 13.0 27 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 51 c2l55A_ not modelled 12.7 15 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 52 d1rvka2 not modelled 12.5 9 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 53 c1zeqX_ not modelled 12.2 15 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 54 c1vqzA_ not modelled 12.0 17 PDB header:ligase Chain: A: PDB Molecule:lipoate-protein ligase, putative; PDBTitle: crystal structure of a putative lipoate-protein ligase a (sp_1160)2 from streptococcus pneumoniae tigr4 at 1.99 a resolution 55 c2ovqA_ not modelled 11.1 24 PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 56 c2p0iA_ not modelled 10.8 10 PDB header:lyase Chain: A: PDB Molecule:l-rhamnonate dehydratase; PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae 57 c2jnvA_ not modelled 10.0 17 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 58 c1u0lB_ not modelled 10.0 22 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 59 d1iloa_ not modelled 9.6 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 60 d2if6a1 not modelled 8.8 18 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 61 c3nyeA_ not modelled 8.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine 62 c3iz5w_ not modelled 8.0 35 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 63 c2fgxA_ not modelled 7.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 64 d1r8ja1 not modelled 7.6 29 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 65 c2k8sA_ not modelled 7.4 21 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6 66 d1ofcx1 not modelled 7.4 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 67 d1lj8a3 not modelled 7.3 23 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Mannitol 2-dehydrogenase 68 c2oz3F_ not modelled 7.2 13 PDB header:lyase Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii 69 c3ic4A_ not modelled 7.2 5 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin (grx-1); PDBTitle: the crystal structure of the glutaredoxin(grx-1) from archaeoglobus2 fulgidus 70 c3f4yF_ not modelled 7.0 41 PDB header:viral protein Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain; PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence 71 d1egoa_ not modelled 7.0 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 72 d1yeya2 not modelled 6.9 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 73 d1v2za_ not modelled 6.8 14 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 74 d1rm6b1 not modelled 6.8 14 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 75 d1sv1a_ not modelled 6.7 14 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 76 d1r5qa_ not modelled 6.5 7 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Circadian clock protein KaiA, C-terminal domain 77 c2x6pA_ not modelled 6.4 29 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 78 c2x6pC_ not modelled 6.4 29 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 79 c2x6pB_ not modelled 6.4 29 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 80 d2cona1 not modelled 6.4 30 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 81 d1nm3a1 not modelled 6.2 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 82 c1cosB_ not modelled 6.1 29 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 83 c1cosA_ not modelled 6.1 29 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 84 c1cosC_ not modelled 6.1 29 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 85 c1ffuF_ not modelled 6.1 14 PDB header:hydrolase Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 86 d2jnya1 not modelled 6.0 10 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 87 d1yq9h1 not modelled 6.0 28 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 88 c2wpnB_ not modelled 5.9 28 PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 89 c3pdgA_ not modelled 5.8 12 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 90 d1ryph_ not modelled 5.6 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 91 d2gl5a2 not modelled 5.5 13 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 92 c2kpiA_ not modelled 5.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 93 d1u07a_ not modelled 5.4 17 Fold:TolA/TonB C-terminal domain Superfamily:TolA/TonB C-terminal domain Family:TonB 94 d1iyxa2 not modelled 5.2 20 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 95 c3b9jJ_ not modelled 5.2 7 PDB header:oxidoreductase Chain: J: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 96 c3etrM_ not modelled 5.2 7 PDB header:oxidoreductase Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of xanthine oxidase in complex with2 lumazine 97 d1rypi_ not modelled 5.2 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 98 c3hrdF_ not modelled 5.2 12 PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase 99 d1e3db_ not modelled 5.1 31 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit